<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30994

Description Uncharacterized protein
SequenceMDQSQQRTVTAPSSSRSYQFHPARAKIIDLFNLYLGRGSRQKPDEPARDPPPNKSQKRVHAPSRDFPPGNEQFIVDFEQLHTQFNDPDQLRAITESVSVTMVLQCSNHAPRAEFLLFALRALFRIGFVNWDTFLPSLLSSVSAAESSLNQAASSSATSSQSLAPVGIGSPGNEQASLTPLAMRSSQRVRAAAVNSLRQISCKIILIGVEFNLKPVTHAEIFQHMMSWLVSWDMREMGTEKSLSEWLRSCLEVIWLLVDEGQSRIPFYELLRSGLQFIENIPDGDEALFTLVMEIHRRRDAMAMHMLMLDQHLHCPTFGTHRISSQTPVNVSAEAVAHLRYSPITYPSVLGEPLCGEDLAMSIPQGGLDWERAVRCIRHAIRTTPSPDWWKRVLVVSPGYRPSAQAGPIPGAVFTSDMIYANCWQEWLVFSDIFFFLIKSGCTDFVDFIDKLVLRLNGDDNHILRTNHVTWLLAQIIRVELVMTALNSDLKKVETTRKILSFHREDRTDPNNPQSVLLDFVSSCQNLRIWSLSATTRAYLNNDQLLKGKQIDEWWRSKGERMMDYMNLDDRSIGMFWVVSYTMAQPACETVINWLSSSGMAELPGLQPNERVMMMQEVTPLPMSLLSGFSMNLCLKLALQMEEALFVSQVVPSIAMVETYTRLLLISPHSMFRSHFTQLAQRNASLLSKPGVTLLVLEILNYRLLPLYRYQGKSKTLMYDVTKIISALKAKRGDHRIFRLAENLCMNLILSLRDFFSVKREGKGPTEFTETLNRITIMTLAITIKTRGIADADHLVYLQTMLEQILATSQHTWSEKTLRHFPSLLRDALSGRVDKRGLSIQAWQQAETTVINQCTQLLSPSAEPSYVMTYLSHSFPQHRQYLCAGACMLMQGHPDNVNSANLARVLREVSPEEVTANIYTLVDVLLHKFHVDLQRGHNIKEILDKHDANLAFFFWTHEMLPLDIFILALIDRDDDPHALIIAKIILERPELMQRINMYCANRGPPEHWLFTQVFKRNELQKALGNHLSWKDRYPTFFDDIAARLLPVIPLVVYRLIENNAMDTADKILTAYSHFLAYHPLRFTFVRDILAYFYGHLPGQLVVKILRVLGLSKIPFSESFPQYISNPSSPTCPPLDYFATLLLNLVNNVIPPLSSSSSNCSSRSGSMADMLNSSSARSLHGKTPGASQPGPANASEGQKAFYQIQDPGTYTQLVLETAVIEILSLPVSAAQIVSSLVQIIVNIQSTLIQSGNGFHGAANGVGQGSVLPTSPSGGSTDSMSASRSTCMNTASFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHTQLYMEASRVVRETWWLTDGKRSQGELDSAVGYALMDPTWAAQDNTSTAIGNIVALLHAFFSNLPQEWLEGTHLIIKNLRPVTSVAMLRVVFRIMGPLLPRLANTHALFNKTLALLLSTMVDVFGKNSQTQVPVEASQIADLIDFLHHVVHYEGQGGAVQSSSKPRPDILALIGRAADSLRPDVQHLLSHLRTDPNTSIYAAAHQNTAKTNTS
Length1534
PositionTail
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.08
Grand average of hydropathy-0.063
Instability index45.98
Isoelectric point7.06
Molecular weight171791.59
Publications
PubMed=21873998

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30994
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     159.01|      51|     546|     423|     489|       1
---------------------------------------------------------------------------
  423-  489 (76.46/76.80)	WQEWLVFSDIfffliksgctdfvdFIDKLVLRlnGDDNHIL......................RTNHVTWLLAQIIRVELVMTALNSDL
  954- 1026 (82.54/49.23)	WTHEMLPLDI..............FILALIDR..DDDPHALiiakiilerpelmqrinmycanRGPPEHWLFTQVFKRNELQKALGNHL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.10|      11|     100|      61|      72|       3
---------------------------------------------------------------------------
   46-   56 (23.42/ 8.45)	PARDPPPNKSQ
   62-   72 (23.68/ 8.42)	PSRDFPPGNEQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.80|      15|     547|     114|     139|       4
---------------------------------------------------------------------------
  119-  137 (23.51/32.92)	LRALFRIgfvnWDTFLPSL
 1409- 1423 (28.29/ 6.39)	LRVVFRI....MGPLLPRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.70|       9|     164|     387|     400|       7
---------------------------------------------------------------------------
  387-  400 (16.12/15.35)	DWWKrvlvvSPGYR
  552-  560 (20.58/ 8.61)	EWWR.....SKGER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.19|      10|     166|     266|     278|       8
---------------------------------------------------------------------------
  244-  253 (20.21/ 8.11)	EWLRSCLEVI
  268-  277 (17.98/ 6.58)	ELLRSGLQFI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.81|      15|     509|     689|     706|       9
---------------------------------------------------------------------------
  692-  706 (24.76/17.25)	TLLVLEILNYRLLPL
 1209- 1223 (22.05/ 6.40)	TQLVLETAVIEILSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.53|      17|     196|    1312|    1328|      11
---------------------------------------------------------------------------
 1312- 1328 (31.86/16.96)	LLAQLPPDFHTQLYMEA
 1508- 1524 (29.67/15.31)	LLSHLRTDPNTSIYAAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.95|      37|    1015|     139|     176|      12
---------------------------------------------------------------------------
  139-  176 (58.21/49.36)	SSVSAAESSLNQAA....SSSATSSQSLAPvGIGSPGNEQAS
 1153- 1193 (61.74/47.17)	SSSSNCSSRSGSMAdmlnSSSARSLHGKTP.GASQPGPANAS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30994 with Med23 domain of Kingdom Viridiplantae
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