<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30993

Description Uncharacterized protein
SequenceMNRSSKRVSAQSGVGGFTFAFLSSSVCCLSDYGAHLRYARFSGLGFGSGVCSAREEFDSDGFSAFSGLSVRRATAFEENASVLDWCYISVGTGGGFSSTDISFSVLDSFRRSGGSHQSLAVMVPRLVTLTSQHHLWFRLDFGGGVRVIIVQVRVSRTTRLLFARASLKDDIARETRSSEASYTGNDPGRPRHPWQHGESLFPGLEMSGGSGGPKAQEGELFVAVAVKGMIGDKLGGGGSRRAVRWAVDNLLPKADRFVMIHVIPTITTIPTPTGERLPLKEVEERLVEMYVREVKQEHESVFVPFLKMCKRSSRSKVETLLLEYDDPAKALLRFIFKSGVNSLVMGSFTPSMFTRITKGPGVPLTVLRYAPETCEVYIVCKDRITTKSMNPLINAGPSTGPKAAASARGYLKDGAASFHTVQSQNLSDHRETIEPGTRRSVSAKELRSTVYSQLKTPPSSKDTSTKVSEIVRRRGASDIPHLNYLEFDQTTQPQPNLENIDEGPPATSKKAKKVDIEAEVNRLKKELENTVTKYKQTCEQLTSTKYKVQVLARECSEDAQRMNSAVEKEELQRKTAVLEKERYMKAVKEVETAKALLAREFCQRQIAQVNALRTYLEKKKVIDQLLGTDQRYRKYTVGEIITATEGFSPEKVIGEGGYGKVYHCSLDSTPAAVKAVRLDTPEKKQEFLKEVEVLSQLRHPHLVLLLGACPENGCLVYEYLENGSLEEYIFHQKNKPPLPWFIRFRVVFEVACGLAFLHSSKPEPIVHRDLKPGNILLNRNYVSKIADVGLAKLVTDVAPDNITTYRHSLLAGTLHYIDPEYHRTGTIRPKSDLYAFGIIILQLLTARKPNGLVHAVENAVQKGTLTEMLDKSVTDWPLAETEELARIGLKCAEFRCRDRPDLKEEVIPVLKRLVETANSKIKKEQCNVRAPSHYFCPILRELMEEPEIAADGFTYEKKAILAWFEKHNVSPVTRQKLDHFKLTPNNTLRSAIRDWKSRVRFSNAFIDASC
Length1010
PositionTail
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.08
Grand average of hydropathy-0.347
Instability index41.35
Isoelectric point9.14
Molecular weight112856.93
Publications
PubMed=21873998

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30993
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.36|      17|      20|      68|      84|       1
---------------------------------------------------------------------------
   68-   84 (27.91/18.52)	LSVRRATAFEENA...SVLD
   88-  107 (24.45/15.24)	ISVGTGGGFSSTDisfSVLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     174.69|      30|      86|     518|     547|       2
---------------------------------------------------------------------------
  444-  466 (22.75/12.08)	...........................KELRSTVYSQLKTPPSS..KDTSTK
  468-  517 (24.40/13.57)	SEIVRRRgasdiphlnylefdqttqpqPNLENIDEGPPATSKKA..KKVDIE
  518-  547 (46.05/33.03)	AEVNRLK....................KELENTVTKYKQTCEQL..TSTKYK
  548-  568 (25.50/14.55)	VQV..LA....................RECSEDAQRMNSAVE.........K
  569-  594 (26.53/15.48)	EELQRKT....................AVLEK..ERYMKAVKEV..ETAK..
  607-  633 (29.46/18.12)	AQVNALR....................TYLEK.....KKVIDQLlgTDQRYR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     232.52|      78|      92|     651|     736|       3
---------------------------------------------------------------------------
  651-  736 (114.80/100.28)	KVIGEGGYGKVYHCSldSTPAAVkaVRLDTpeKKQEFLKEVEVLSQLRHPHLV.LLLGACPENgCLVYEY.LENGSLeEYI...FHQKN..KP
  745-  829 (117.72/75.56)	RVVFEVACGLAFLHS..SKPEPI..VHRDL..KPGNILLNRNYVSKIADVGLAkLVTDVAPDN.ITTYRHsLLAGTL.HYIdpeYHRTGtiRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.97|      22|      43|     308|     350|       4
---------------------------------------------------------------------------
  302-  327 (30.49/57.70)	FVPflkMCKRSSRSK.VETLLLEYDdP
  348-  371 (32.48/ 9.95)	FTP..sMFTRITKGPgVPLTVLRYA.P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.64|      22|      23|      22|      43|       7
---------------------------------------------------------------------------
   22-   43 (40.63/25.09)	LSSSVCCLSDYGAHLRYARFSG
   46-   67 (40.01/24.60)	FGSGVCSAREEFDSDGFSAFSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.04|      18|     186|     208|     232|       8
---------------------------------------------------------------------------
  208-  232 (27.07/26.42)	GGSGGPKAqegelfvAVAVKGMIGD
  396-  413 (33.97/17.49)	GPSTGPKA.......AASARGYLKD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30993 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ETRSSEASYTGNDPGRPRHPWQHGESLFPG
2) HLNYLEFDQTTQPQPNLENIDEGPPATSKKAKKVD
3) VQSQNLSDHRETIEPGTRRSVSAKELRSTVYSQLKTPPSSKDTSTKVSEIVRRRG
174
481
421
203
515
475










Molecular Recognition Features






MoRF SequenceStartStop




NANANA