<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30989

Description Uncharacterized protein
SequenceMSSEKKQLIVVAEGTAALGPYWQTIVSDYLHKIIRSFCGSELNGERNPVSSVELSLVIFNSHGSYCGCLVQRSGWTRDVDIFLHWLSSIQFAGGGFSEAATAEGLAEALMMFPPPPGQAQPSNDLKRHCILITASNPYSLPTPVYRPKLQNAERNENGDALPESRLSDAETVASYFSRCAVSLSVVCPKQLPKIRALYNAGKLNPQSSDLSIDTVKNTFYLVLISENFVEARAALSHSATNVPQTQSPVKMDRATVAPSLPVTGPPPASLPSANGPILNRQPVSVGPVPTATVKVEPSTVSSMAAVPTFPHIPSSVARPASQAIPSVQTSSASSVSQEMVTNAENAPDVKPVVTGMTPPLRTGPPGNVNLLNNLSQVRQVMSSAALAGAASSAGQSAVAMHMSNMISTGMATSQPPSQTAFSSGQQGNTSMAGSGALMGNAQAGQSPGPNNSFSPQTTSNVTSNLGVSQPMPAMNQGSHSGGQMMQGGISMNQNMITSLGQGNVSSGTGGMMPTPGVGQQAQSGIQQLGGSNSSAPNMQLSQASSGALQPSQSKYVKVWEGNLSGQRQGQPVLITRLEGYRNATASDSLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQDKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQITNQQQQQHQQQQQQQQQQQIHQQQQQQQIQQQQQHQQLPQLQQQQHQLSQLQHHQQQHQQQHQLSQLQQHQQQQQTSPLNQMQQQTSPLNQMHQQTSPLNQMQQQTSPLNQMPQQQPQQMVGSGVMGGQAFAQGPGRSQQGGGGQPNMPGAGFMG
Length832
PositionUnknown
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.04
Grand average of hydropathy-0.458
Instability index59.29
Isoelectric point9.02
Molecular weight88923.97
Publications
PubMed=21873998

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30989
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     155.52|      18|      18|     752|     769|       1
---------------------------------------------------------------------------
  688-  700 (26.35/ 7.00)	QQ...QQQQQQ..QIHQQ
  714-  728 (29.34/ 8.71)	Q...LPQLQQQQHQLSQL
  733-  744 (25.41/ 6.45)	Q.....QHQQQ.HQLSQL
  752-  769 (37.21/13.21)	QTSPLNQMQQQTSPLNQM
  772-  789 (37.21/13.21)	QTSPLNQMQQQTSPLNQM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     110.23|      25|      25|     465|     489|       2
---------------------------------------------------------------------------
  410-  431 (31.97/ 8.96)	MATSQP.PS..QTAFSSGQ..QGntSM
  465-  489 (47.46/16.75)	LGVSQPMPAMNQGSHSGGQMMQG..GI
  511-  532 (30.80/ 8.37)	...MMPTPGVGQQAQSGIQQLGG..SN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     114.86|      24|      28|     243|     266|       5
---------------------------------------------------------------------------
  243-  265 (36.06/15.15)	...PQTQS.P.VKMDRATVAPSLPVTGP
  296-  317 (31.08/12.03)	E..PSTVS....SMAAVPTFPHIPSSVA
  318-  343 (22.26/ 6.50)	R..PASQAiPsVQTSSASSVSQEMVTNA
  344-  364 (25.45/ 8.50)	EnaPDVK..P.V...VTGMTPPLR.TGP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.51|      16|      18|     630|     646|       6
---------------------------------------------------------------------------
  630-  646 (24.45/23.20)	FLGQLQDKKlCAVIQL..P
  650-  667 (22.06/14.61)	LLLSVSDKA.CRLIGMlfP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     116.25|      36|      46|     139|     176|       7
---------------------------------------------------------------------------
  139-  176 (53.78/41.92)	SLPTPVYRPKLQnAERNeNGDALPESRLSDAETVASYF
  184-  219 (62.47/39.20)	SVVCPKQLPKIR.ALYN.AGKLNPQSSDLSIDTVKNTF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      93.12|      21|      57|     536|     556|      12
---------------------------------------------------------------------------
  536-  556 (36.73/18.36)	PNMQLSQ.ASSGALQP....SQSKYV
  559-  581 (27.82/12.01)	WEGNLSG.QRQG..QPvlitRLEGYR
  595-  614 (28.58/12.55)	PTMQIVRlISQDHMNN....KQ..YV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30989 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LSHSATNVPQTQSPVKMDRATVAPSLPVTGPPPASLPSANGPILNRQPVSVGPVPTATVKVEP
2) QQQQHQQLPQLQQQQHQLSQLQHHQQQHQQQHQLSQLQQHQQQQQTSPLNQMQQQTSPLNQMHQQTSPLNQMQQQTSPLNQMPQQQPQQMVGSGVMGGQAFAQGPGRSQQGGGGQPNMPGAGFMG
3) SAVAMHMSNMISTGMATSQPPSQTAFSSGQQGNTSMAGSGALMGNAQAGQSPGPNNSFSPQTTSNVTSNLGVSQPMPAMNQGSHSGGQMMQGGISMNQNMITSLGQGNVSSGTGGMMPTPGVGQQAQSGIQQLGGSNSSAPNMQLSQASSG
4) SSVARPASQAIPSVQTSSASSVSQEMVTNAENAPDVKPVVTGMTPPLRTGPPGNVNLLNNLS
235
708
396
314
297
832
546
375










Molecular Recognition Features






MoRF SequenceStartStop




NANANA