<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30984

Description Uncharacterized protein
SequenceMKPSSASLDSWREYFRRGDSDIFGIIDHAIMVAAADCPNRFKSRRDKIAELLFSCRVNRCTGCDHVELSVPSGGDGEEEEANNIGDAAVDGGEEAGGSKESKANSSRGDNNHTYDDEAEALSDAIEEFSMVSKEVCRIKEILLNKDVESHSVILESLRKLKLMSLNVDILKSTEIGKAVNGLRKHGSDKIRQLAKTLIAEWKEIVDQWVSTTKEIAGAEGTPESANPSVVDEDEEEEEAFPSLPYDVDIFTPEANGFEMLNGDFFDSLDFDGNLCNSGDYNTSREKERRPHNVAKRRPEGTQTRIQDAPFRSIKPSSHADETRRPLKPNTEQRMKNEMVSVHKSEKPMIPRRKPLARPPQEQKLKGLDADAKFEFAKRKLQESYQHHENAKKQRTIQVLETIPKQGNAQKPQLKRPGMNNRNWANGRK
Length428
PositionUnknown
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.05
Grand average of hydropathy-0.913
Instability index50.12
Isoelectric point5.84
Molecular weight48147.19
Publications
PubMed=21873998

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30984
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.32|      23|      24|      73|      95|       1
---------------------------------------------------------------------------
   73-   95 (39.01/23.16)	GGDGEEEEANNIGDAAVDGGEEA
   96-  118 (40.31/24.16)	GGSKESKANSSRGDNNHTYDDEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.21|      21|      24|     125|     147|       2
---------------------------------------------------------------------------
  126-  146 (34.43/23.57)	EEFSMVSKEVCRIKEILLNKD
  148-  168 (32.78/21.98)	ESHSVILESLRKLKLMSLNVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.03|      16|      16|     377|     392|       3
---------------------------------------------------------------------------
  377-  392 (27.93/19.01)	KRKLQ..ESYQHHENAKK
  393-  410 (21.09/12.56)	QRTIQvlETIPKQGNAQK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.91|      19|      26|     289|     314|       4
---------------------------------------------------------------------------
  289-  307 (34.28/30.24)	RPHNVAKRRP..EGTQTRIQD
  316-  336 (29.63/10.96)	SSHADETRRPlkPNTEQRMKN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.32|      14|      15|     227|     240|       5
---------------------------------------------------------------------------
  227-  240 (23.74/13.75)	PSVVDEDEEEEEAF
  244-  257 (26.58/16.19)	PYDVDIFTPEANGF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30984 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) CNSGDYNTSREKERRPHNVAKRRPEGTQTRIQDAPFRSIKPSSHADETRRPLKPNTEQRMKNEMVSVHKSEKPMIPRRKPLARPPQEQKLKGLDADAKFEFAKRKLQESYQHHENAKKQRTIQVLETIPKQGNAQKPQLKRPGMNNRNWANGRK
2) LSVPSGGDGEEEEANNIGDAAVDGGEEAGGSKESKANSSRGDNNHTYDD
275
68
428
116










Molecular Recognition Features






MoRF SequenceStartStop




1) AFPSLPYDVDIF
2) KPMIPRRKPLARP
3) QKPQLKR
4) SWREYFRR
239
346
409
10
250
358
415
17