<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30981

Description Uncharacterized protein
SequenceMEPERTKFGGPKELCGAVDLLSQYKLSQHHEFFCKKSLSASLSDSHYLHNVVGDTEIRKGEGMQLDQLVQNMSQTRETNSTRIQPFEMDELMEAFQLSDTTPVELPLEEKGAPTIPPKSKSESKDKDRKHKKHKDRSKDKDREHKKHKHRHRDRSKDKDKDRDRKKEKNGHHDSGEHSKKHHDKKRKHDGDEDLNDIHRHKKNKHKSSKLDEMGAIRVGG
Length220
PositionHead
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.03
Grand average of hydropathy-1.645
Instability index36.44
Isoelectric point9.32
Molecular weight25641.37
Publications
PubMed=21873998

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
transcription factor binding	GO:0008134	IBA:GO_Central

GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30981
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      81.67|      17|      17|     129|     145|       1
---------------------------------------------------------------------------
  129-  145 (33.82/11.05)	KHK.KHKDRS..KDKDRE........HK
  146-  165 (23.90/ 6.03)	KHKhRHRDRSkdKDKDRD........RK
  177-  201 (23.95/ 6.06)	HSK.KHHDKK..RKHDGDedlndihrHK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30981 with Med19 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HNVVGDTEIRKGEGMQLDQLVQNMSQTRETNSTRIQPFEMDELMEAFQLSDTTPVELPLEEKGAPTIPPKSKSESKDKDRKHKKHKDRSKDKDREHKKHKHRHRDRSKDKDKDRDRKKEKNGHHDSGEHSKKHHDKKRKHDGDEDLNDIHRHKKNKHKSSKLDEMGAIRVGG
49
220










Molecular Recognition Features






MoRF SequenceStartStop




1) DLNDIHRHKKNKHKSSKLDEMGAIRVG
2) EHSKKHHDKKRKH
3) KDKDRKHKKHKDRSKDKDREHKKHKHRHRDRSKDK
4) KDRDRKKEKN
193
176
124
160
219
188
158
169