<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30976

Description Uncharacterized protein
SequenceMVVMSNKFFESIGGAPAYSTVAVAVKGSVGDAVGGAASRRALRWTVENLLPNVDRLVLVHVMPNVTTIPSPSGSKIRVEELEESVVAMYKRDLRKEYEQVFVPFKRLCGSSKVETLLMEHDDPAKALLKYVSDSEVECLVLGSCSSSFLTRKKGQEMPLRVLGEAPETCETYVICKDRILTKSTNQLSPDSSSSFRIPQGAEAYTETFSRTRSDKTGLSASSMSSSGRKHSRRPASLPHSNPVSRVYSDAQSSTDIGLVDDEHTRSVIRHSLVSGNKMQLNPGANIKTPKSDVKSEVAQLRKEVETTLSMYKQACEELVHKQTQVKSLSSECIKETRRVITALEKEEMLRKAAAEEKEKHLKAVKEVQEAKSMLAKEFCERQLAELSALKQSIEKQKVIDQLFLKDGRYRKYTKEEIAAATDNFSSRKIIGEGGYGKVYKCSLDHTPVALKVLKPDSIEKKEEFLREISVLSQLRHPHVVLLLGACPDNGCLVYEYMENGSLDAHISPKKGKPSLSWFIRFRIIYETACGLAFLHNSKPEPIVHRDLKPGNILLDRNFVSKIGDVGLAKLMSEESPDSVTVYRNSIIAGTLYYMDPEYQRTGTIRPKSDLYAFGIIILQLLTARHPNGLLFCVEDAVKRGCFGDMLDGSVRDWPMAEAEELARIAIKCSQLKCRDRPDLDTQVLPALKRILESANERLKIEQDNVRPPSHYFCPILKEIMEDPYIAADGFTYEGRAIRAWIQHNQNVSPVTKHRLKHCDLTPNHTLKSAIQEWRSRSRLDLSTTLGSF
Length788
PositionTail
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.388
Instability index51.01
Isoelectric point8.75
Molecular weight88301.36
Publications
PubMed=21873998

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30976
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.19|      28|      29|     166|     194|       1
---------------------------------------------------------------------------
  166-  194 (45.82/40.53)	PETCETYVICKDRILTKSTNqLSPDS.SSS
  198-  226 (42.37/31.16)	PQGAEAYTETFSRTRSDKTG.LSASSmSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.83|      19|     118|     344|     364|       3
---------------------------------------------------------------------------
  316-  339 (25.41/12.44)	EELVHKQTqvkslSSECIKETRRV
  346-  364 (29.43/13.79)	EEMLRKAA.....AEEKEKHLKAV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.37|      29|     147|     468|     501|       4
---------------------------------------------------------------------------
  468-  501 (47.46/48.31)	ISVLSQL..RHPHVVLLlgaCPDN....GClvYEYMENGS
  615-  649 (45.91/31.46)	IIILQLLtaRHPNGLLF...CVEDavkrGC..FGDMLDGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     157.76|      52|     314|     233|     292|       5
---------------------------------------------------------------------------
  233-  292 (82.90/89.35)	RPAS.LPHSNPVSRVysdaqssTDIG...LVDDEHTRS..VIRHSLVSGNKMQLNP....GANIKtPKSD
  548-  609 (74.86/58.83)	KPGNiLLDRNFVSKI.......GDVGlakLMSEESPDSvtVYRNSIIAGTLYYMDPeyqrTGTIR.PKSD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30976 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AYTETFSRTRSDKTGLSASSMSSSGRKHSRRPASLPHSNPVSRVYSDAQSSTDIGLVDDEHTRSVIRHSLVSGNKMQLNPGANIKTPKSDVKSEVAQ
203
299










Molecular Recognition Features






MoRF SequenceStartStop




NANANA