<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30972

Description Uncharacterized protein
SequenceMKPPPSAASLDRWRDYFRRGGSDIFEIIDHAIMVAATDCPNKFKSRRDRIAELLFSCRVTRCNGCHHSSELSLPGDDEAVDGSKESKVNSSRGDNNQIIVGGYDCHDDDDDDEAEALSDAIEEFSVVFKEVVRIKEILLNKDDEPHSVIVEALRKLKLMSLDVDVLKSTEIGKAVNGLRKHGSDNIRQLAKTLIAEWKELVDQWVNTTKDINGAEGTPESANLSVVDEEEEVFPSLPYGVDIFTPEANGFEMLNGDFFDSLDFDGNPCNSGEYNTSREDQRRPQKRRPEGAQMRIQKPSPADGTRRPLNQRMKNEVGSVQKSESPMIQRRKPPEEKHKGLDADAKFEFAKRKLQASYQQHDKAKKQRTIQVLETIPKQCGSAAQKPQLKRPGMKNRSWSNGRK
Length403
PositionUnknown
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.876
Instability index46.35
Isoelectric point6.01
Molecular weight45439.38
Publications
PubMed=21873998

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30972
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.38|      19|      29|     295|     315|       1
---------------------------------------------------------------------------
  295-  313 (34.53/20.16)	IQKP.SPADGTRRPLNQRMK
  319-  338 (28.85/10.53)	VQKSeSPMIQRRKPPEEKHK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.44|      17|      29|     108|     124|       3
---------------------------------------------------------------------------
  108-  124 (26.54/14.86)	DDDDDEAEALSDAIEEF
  140-  156 (26.90/15.15)	NKDDEPHSVIVEALRKL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30972 with Med26 domain of Kingdom Viridiplantae
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