<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30971

Description Uncharacterized protein
SequenceMRRDTGKPVFPPPLRGLGSGLLLLFLSSDPPSSIYKPKGEVHCLSGGEDATASDRSISGEIRLNNRPWLSLRTKSHAFSPWPSNLFLILPISPPTDPDAPSKPASTSPRRVAASVASQLYTFADLDIGLPKTVENIEKKVEALIEPPPPESMMNLSAIQNLLPPNIEVPSGWKPGMPVELPKDWPMPPPGWKPGDPVVIPPAPRAQEQQQMLRPPPGLHRPPDVIQVRAVQLDILESDDSSDYSSDDASSDDGE
Length254
PositionMiddle
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.05
Grand average of hydropathy-0.466
Instability index70.64
Isoelectric point4.98
Molecular weight27540.99
Publications
PubMed=21873998

Function

Annotated function 
GO - Cellular Component
core mediator complex	GO:0070847	IBA:GO_Central
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30971
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.91|      16|      16|     162|     177|       1
---------------------------------------------------------------------------
  169-  186 (30.73/11.51)	PSGWKPGMPveL..PKDWPM
  188-  202 (25.06/ 8.14)	PPGWKPGDPvvI..PP...A
  203-  220 (23.12/ 6.99)	PRAQEQQQM..LrpPPGLHR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.98|      14|      16|     135|     150|       4
---------------------------------------------------------------------------
  135-  150 (16.64/17.31)	NIeKKVEALIePPPPE
  154-  167 (24.34/13.46)	NL.SAIQNLL.PPNIE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30971 with Med4 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IEVPSGWKPGMPVELPKDWPMPPPGWKPGDPVVIPPAPRAQEQQQMLRPPPGLHRPPDVIQVRAVQLDILESDDSSDYSSDDASSDDGE
166
254










Molecular Recognition Features






MoRF SequenceStartStop




1) QMLRPPPGLHRPPDVIQVRAVQLDILESDDSSDYSSDDA
210
248