<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30970

Description Uncharacterized protein
SequenceMAVAPLWESVTSVIRSAEEKNVDPLQWALELRLTLSAAGISLPSPDLAHLLVSHIFWENHTPLSWKLLEKAITVTIVPPLLVLALLSHRVIPNRKHHPAAYRLYLELLKRHAFSLMPLIRGSGYHRTMNSIDDILHLSEIFGLPNQEPGSILLAFVFSIVCQLVDASLDDEGLLELTSNQRSNWPHDMEIDGLLKRNDNHGVLEKANTEMAITLIQFLLQNEVTSRILHLASQNMPTHWEDFSQRFSVLTTKSLVVRNSKHINPEALTYLASHTSKFLERESKTIPRGEFHALLSSGSILALTSQHHGTSGSALWLPIDLFFEDIMDGTQAAAASAVENLTGLVKALQAVNSTTWHDAFLALWLAALRLVQRERDPIEGPVPRTDTFLCVLLSVTPLAVANIIEEEESQWIDQTASSPSNQWKEKKGKCRQGLVNSLQQLGDYESLLTPPLSVQSVANQAAAKAVMFISGITNGSGSYENTSMNESASGYSGNMRHLVVEACISRNLLDTSAYLWPRFANGGTNQVPQGVAGNVSCWSLVMKGSSLTPSLTNSLITTPASSLAEIEKIYEVATTGSEDEKIAAASILCGASLFRGWSIQEHVIIFIVTLLSPQAPANISGSYSHLINCAPFLNVLLVGISPVDCVQIFSLHGVVPLLAGALMPICEAFGSGIPNITWTLPTGEVISSHAVFSTAFILLLRLWRFDHPPLDYVLGDVPPVGPQSSPEYLLLVRNCRLECFGKSPKDRMARRRFSKVIDISVDPIFMDSFPRLKQWYRQHQECMASILSELKTGSPVHHIVDSLLSMMFKKANKGGSQSLTPSSGSSSLSTSGVDDSSDQLKIPAWDILEAAPFVLDAALTACAHGSLSPRELATGLKTLADFLPATLGTMVSYFSSEVTRGLWKPVSMNGTDWPSPAANLASVEQQIELILAATGVDVPRLPADGISAATLPLPLAALVSLTITYKLEKATERFLVLVGPALDALAAACPWPCMPIVTSLWTQKVKRWSDFLIFSASRTVFHHNSDAVIQLLRSCFTCTLSLTPTSQLCSYGGVGALLGHGFGSLYSGGISTAAPGILYIKVHRSIRDVMFLTEEILSLLMFSVKSIATTAEQLKKTKDGLRYGIGQVSLSQAMTRVKLAASLGASLVWISGGPNLVQALIKDTLPSWFISVHGEEDELGGMVPMLRGYALAYFAILSSAFAWGVDSSSPASKRRPRVLWLHLEFVVSALEGKISLGCDWATWQAYVTGFVSLMVQCTPAWVLEVDVEVVKRLSKSLRQWNEQDLALALLCAGGLGTMGTATELIVETCHQL
Length1311
PositionTail
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy0.189
Instability index42.24
Isoelectric point6.07
Molecular weight142666.88
Publications
PubMed=21873998

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30970
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.13|      20|      88|      46|      68|       1
---------------------------------------------------------------------------
   46-   68 (32.16/28.97)	DLAHLlvSHIF.WENHTPLSWkLL
  133-  153 (32.97/18.59)	DILHL..SEIFgLPNQEPGSI.LL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.94|      28|     126|     854|     882|       3
---------------------------------------------------------------------------
  854-  882 (44.53/32.21)	LDAALTACAHGSLsP..RELAT.GLKTLADFL
  981- 1011 (48.41/30.47)	LDALAAACPWPCM.PivTSLWTqKVKRWSDFL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     160.98|      52|     270|     615|     686|       4
---------------------------------------------------------------------------
  615-  677 (72.21/83.53)	PANiSGSYSHLI.NCApfLNVLlvGISPVDCVQIFSLHGVVPLlagALMPIceaFGSGIPNI.TW
  721-  774 (88.77/47.66)	PQS.SPEYLLLVrNCR..LECF..GKSPKDRMARRRFSKVIDI...SVDPI...FMDSFPRLkQW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.88|      33|      90|    1141|    1174|       7
---------------------------------------------------------------------------
 1141- 1174 (55.01/34.52)	SLGAS.LVWISGGPNLVQALIKDTlPSWFISVHGE
 1234- 1267 (56.87/31.74)	SLGCDwATWQAYVTGFVSLMVQCT.PAWVLEVDVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.17|      33|      47|     224|     261|       9
---------------------------------------------------------------------------
  224-  261 (45.96/44.63)	TSRILHLASQNMPThwEDFsqrFSVLTTKSLVVRNSKH
  274-  306 (55.21/35.06)	TSKFLERESKTIPR..GEF...HALLSSGSILALTSQH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.94|      24|     370|     825|     848|      11
---------------------------------------------------------------------------
  825-  848 (43.60/27.17)	SSLSTSGVDDSSDQLK.IP..AWDILE
 1197- 1223 (37.34/22.09)	SSAFAWGVDSSSPASKrRPrvLWLHLE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30970 with Med33 domain of Kingdom Viridiplantae
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