<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30969

Description Uncharacterized protein
SequenceMMSNVFDGAPPDYSSISVAVKGSTGDTVGGAASRRAVRWAVDNLLPHIDRLVLVHVMPTVTTIPSPSGSKILVEDLEESVVSMYKQDLRKEFEEVFVPFNKICGSIKVETLLLEHDDPAKALLKYISDSEVECLVIGSCSPSFLTRKKGQEMPLMVQGEAPETCEVYVIAKDRVLTKSTNQLSPVKLSSDSSYRFRTPKRAEAHTDPFNRTCSDKTSLAASYMIHASTGIRLGHDEQVRSILGHNIVSTSNMQLNPGANMNTPKWQSNVMYEIEQLRKQVQTTLCMYKQACEELVHKQTQVQSLSYECIKDTKRVISALEKEEMLRKEAEEEKQKHLKAVKEIEDAKSMLAKEFCDRKLAELNALQQALKKQQVMDQLLLSDSRYRKYTKEEIVAATDNFSLSKIIGEGGYGKVYKCSLDHTPVALKVRRPDTIEKKQEFLREISVLSQLRHPHVVLLLGACPDNGCLVYEYMDNGSLDAHISRKKGKPSLPWFIRFKIIYETACGLAFLHNSKPEPIVHRDLKPGNILLDKNFVSKIGDVGLAKLISEEAPESVTVYRNSTIAGTLYYLDPEYQRTGTFRPKSDLYAFGIIIFQLLTARHPNGLLFCVEDAVKRGCFGEMLDGSVREWPMAEAEELARIAIQCSQLKCRDRPDLGTQVLPALKRILESANSRLKTEQAKARPPSHYYCPILKEIMEDPQIAADGFTYEGKAIKAWIQNNQNVSPVTKNRLRHCDLTPNHTLKSAIQEWRSRSGF
Length755
PositionTail
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.372
Instability index48.61
Isoelectric point8.42
Molecular weight85019.84
Publications
PubMed=21873998

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30969
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     220.07|      73|     201|       6|      86|       1
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    6-   86 (113.59/95.37)	FDGAPPDYSSI..SVAVKGSTGDTVGGAASRRAVrwavdnlLPH.IDRLVLVHVMPTvTTIPSPS.GSKIL..VEDLEESV...VSMYKQ
  208-  289 (106.48/70.58)	FNRTCSDKTSLaaSYMIHASTGIRLGHDEQVRSI.......LGHnIVSTSNMQLNPG.ANMNTPKwQSNVMyeIEQLRKQVqttLCMYKQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     219.76|      71|     147|     402|     477|       2
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  402-  477 (115.69/97.38)	LSKIIGEGGYGK..VYKCS.LDHTPVAL..KVRRPDTIEKKQEFLREISVLSQL...RHPHVVLLlgaCPDN....GCLvYEYMDnGS
  543-  625 (104.06/71.34)	LAKLISEEAPESvtVYRNStIAGTLYYLdpEYQRTGTFRPKSDLYAFGIIIFQLltaRHPNGLLF...CVEDavkrGCF.GEMLD.GS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.54|      20|     189|     187|     206|       3
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  187-  206 (36.80/27.31)	LSSDSSYRFRTPKRAEAHTD
  379-  398 (34.74/25.34)	LLSDSRYRKYTKEEIVAATD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30969 with Med32 domain of Kingdom Viridiplantae
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