<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30967

Description Uncharacterized protein
SequenceMESESAKFGGPRELGGARDLITQYKLLPHHEFFCKRSLPESLSDAHYLHNVVGDTDIRKGEGMQLDQLIPNASHNRDGNARIQPFVLDELKEAFEINDTSPVELPPAEKGALTIASKSKSESKDRDRKHKKHKDRNKDKDREHKKHKHKHKDRSKDKDKDKDRERKKEKSGHHDKKRKHNGNEDLDDAQRHKKSKVMAYVGISSLVRKAEVG
Length212
PositionHead
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.04
Grand average of hydropathy-1.444
Instability index38.97
Isoelectric point9.52
Molecular weight24386.07
Publications
PubMed=21873998

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
transcription factor binding	GO:0008134	IBA:GO_Central

GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30967
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.60|      19|      21|     132|     152|       1
---------------------------------------------------------------------------
  132-  152 (34.92/18.78)	HKDrnKDKDREHKKHKHKHKD
  156-  174 (36.68/15.25)	DKD..KDKDRERKKEKSGHHD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.85|      17|      23|      49|      68|       2
---------------------------------------------------------------------------
   49-   68 (25.60/26.79)	HNVVGDTDIrkgEGMQLDQL
   74-   90 (31.25/21.97)	HNRDGNARI...QPFVLDEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.31|      13|      15|      91|     103|       3
---------------------------------------------------------------------------
   91-  103 (22.13/11.97)	KEAFEINDTSPVE
  109-  121 (20.18/10.46)	KGALTIASKSKSE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30967 with Med19 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AHYLHNVVGDTDIRKGEGMQLDQLIPNASHNRDGNARIQPFVLDEL
2) FEINDTSPVELPPAEKGALTIASKSKSESKDRDRKHKKHKDRNKDKDREHKKHKHKHKDRSKDKDKDKDRERKKEKSGHHDKKRKHNGNEDLDDAQRHKKSKVMAYVGISSLVRKAEVG
45
94
90
212










Molecular Recognition Features






MoRF SequenceStartStop




1) RKHKKHKDRNKDKDREHKKHKHKHKDRSKDKDKDKDRERKKEKSGHHDKKRKHNGNEDLD
127
186