<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30966

Description Uncharacterized protein
SequenceMKPSASLDTWRDYFHRGDSDIFGIIEHAIMVAATDSPVELKSRRDAIIELLMRYDQPDLSKAGDKETNNSRKTVEADDGGHEEDEAKLNVNQIVDEVMRIKDILLNKHVELSVLFKSLTKLASMSISLDLIKGSEIGKAVNRLRKHGSDNISKLAKTLIKKWTEMVDQLINTPKEVAAADDGMPESATLSIVDEAENFPSLPHDLDLYAEPTVLELSQFLDSLDCDGNLPDFVEPKHERKVQSRMIRRPVGTCEANVVGRDTNNQQMRRKEADVRPMRHSAPVLDETRRQPKQTREQMVRTNQRKPNDVAEQKRKLAGSQQDKLKVLDQEAKFENAKRKLQESYQQHEKAKRQRKIQVLETIPNQSKAQRPLLKRPVRR
Length379
PositionUnknown
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.03
Grand average of hydropathy-0.830
Instability index42.99
Isoelectric point8.79
Molecular weight43320.78
Publications
PubMed=21873998

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30966
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.19|      15|      15|     338|     352|       1
---------------------------------------------------------------------------
  338-  352 (26.62/18.41)	RKLQ..ESYQQHEKAKR
  354-  370 (21.57/13.60)	RKIQvlETIPNQSKAQR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     149.53|      50|     100|      64|     118|       2
---------------------------------------------------------------------------
   64-  118 (74.12/64.73)	DKETNNSRKTVEADDGGHEEdeAKLNvnqIVDEVMRIK......DILLNKHV.ELSVLFKSL
  167-  223 (75.40/51.14)	DQLINTPKEVAAADDGMPES..ATLS...IVDEAENFPslphdlDLYAEPTVlELSQFLDSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.08|      17|      22|     258|     274|       4
---------------------------------------------------------------------------
  258-  274 (28.81/17.74)	VGRDTNNQQMRRKEADV
  283-  299 (26.27/15.58)	VLDETRRQPKQTREQMV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30966 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LSKAGDKETNNSRKTVEADDGGHEEDEAKL
2) PDFVEPKHERKVQSRMIRRPVGTCEANVVGRDTNNQQMRRKEADVRPMRHSAPVLDETRRQPKQTREQMVRTNQRKPNDVAEQKRKLAGSQQDKLKVLDQEAKFENAKRKLQESYQQHEKAKRQRKIQVLETIPNQSKAQRPLLKRPVRR
59
230
88
379










Molecular Recognition Features






MoRF SequenceStartStop




1) KVLDQEAKFENAKRKLQESYQQHEKAKRQRKIQVLETIPNQSKAQRPLLKRPVRR
2) LDTWRDYFHR
3) RRDAIIELLMRYDQ
325
7
43
379
16
56