<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30964

Description Uncharacterized protein
SequenceMQRYHPANCTSAVNNTAIGARDSGRADSSSIGNYSLNSRQRPPPLTPYKLRCEKDGLNSRLGPPDFHTPTSSSPEENLTKEYIQFGYKETVDGLKEADEIILTQVHTFSKPVVLKCKESVRKCFRAINESRALKRKAGQVYGVPLSGSLLGKPGFPEQKSCGEETKKKWIESLSQQHKRLRSLADNIPGYRRKTLFEVLIRNNVPLLRATWFIKVTYLNQVRPSTAAISSGTPDKTQNSRCEQWTKDVIEYLQYLLDELLSRNSSYPSQQTRDRSPQMLYAGSMQKISPASSSLYGEETSLHFKWWYMVRLLQWHHAEGLLFPYLIVDWVLRLLQEKDVFEILLLLLPIVYGFLESIVLSQTYVQSLVAIAVRFIEEPAPGGSDLVDNSRRAYTLSALIEMVRYLVLAAPDTFVSSNCLPLPPSIAACGPNDVSYASKAYENLEKLRSNSSEISTQFQGRGVDSRFGFLSFDYTISTIQRSADDLAKIASAGYPQHNVAKAVQALDKALSDGDIRAAYSYLFEDLCNGAVDETWIAEVSPCLRSSLRWIGAISTSFVCSAFFLIEWATCDFRDFRAGVPKDIKFSGRKDCSQVYLVIQLLKQQILGGEFAARKGKNRRSNSLGVSKPSSSMDAFESPGPLHDIIVCWIDQHEVHRGGAKRLQLLVFELIRSGIFNPVAYVRQLIFSGMIDMIQSAADPERRIRHHRILKQLPGWFVYDTLEEAQLLGGDKLEEAVRIYSNERRLLLRELLVNADQKSKKNSTFLPSVDLPRTFNAMADNQELRKHTKRSKDIRELKERIAALLQLPDVSCGVKNSVRDEFQSSVKESSGSVYSKMDHLESTPGCEDCKRAKRKKMNDEKSSSYQGSSPIASDEEDNWWIKKGFKTVEPSLKVDPLMEITKQVPRGRQKMVRKTQSLAQLQAARIEGSQGASTSHVCDNKVSCPHHGPGVEGVNHKVVDVFRTSTSVDIVSVGNSLKQLQFVDKRSIAVWLVNVVRQLVEESEKSSVRVGQFNKGAPVEEKNTVRWKLGADELSSILFLMDISLDLVSVVKFLFWLLPKAKSSPSFSVQGGRNLVIMPRNVENNVCEVGEAILVSSLRRYENILFSADLVPEAMTALMARAASLMSSNGKISGSAALVYARYILNRYGNLPSVVEWHNNFKATCEKRLLSELDHTRSGNGEYEIPLNVPAGVDNADDYLRKKISSSGTRLSRVGLNMREVVQRHVEETTHYLRKLIGTDTMKASLAEKNDDGYQVAQQIVVGLMDCIRQTGGAAQEGDPSLVSSAVSAIINSVSNSMARILDFSVGNVHQNRPSGVGSSNIARHILQIHITCLCLLKEALGERQSRVFEIALATESSTALAGAFAPAKGSRGQHQLSPESFDSNANNTNDMPNGTGKLALSKATKVTAAVSALVIGAITHGVITLERIVGLLRLRECLDFVQFVRRTKSSSNGSARSVGASKVDNSIEVYVHWFRLLVGNCKTVSEGMVLELVGESSVVAVSRMQRMLPLKLVFPPAYSIIAFVLWRPLLSSGNSNSSVHEDTHRLYQSLTVAFHDVIKHLPFRDVCFRDTQGLYELIVADSTDAEFASILELNGMDMHLKSVAFAPLRARLFLNSVIDCKVPSSGYSHEAVCESKKRHQGNGTKLVDKLVSVLDCLQPAKFHWQWVELRLLLNEQALTEKLENHDLPLTDAIRSSCPTSEKPEASENEKNFIQILLTRLLVRPDAVPLFSEVVHLFGRSVEDSMLKQAEWFLAGPDVLLGRKTIRQKLIIVGESKGLPTKPQFWKPWGWCSNSSSDPITANKAGKKRKLESTSMEEGEVIEEGLGSKKLLFDENSPSVGYGFTTERAFVQLVLPCIDQSSDESRSIFVNELVRQFSNIEQQLSSVTIRSITNNKQMGTASSGSEVSSNKGSTRKGLRGGSPSLARRSSINTTDTAPPPSPAALRASMSLRLQFLLRLLPVICREPSFRNTRHTLASTIVRLLGSRVVYEDSAACSPRSDVSKAETESTRDPSSMADLSSDVLFDRLLFVLHGLLSNHQPNWLLPRSSSNDSSKDFTLFDRDAAESLQNELARMQLPDTIRWRIQAAMPILLPSLRCSLSCQPHSVPPTALTLVQPSGSAAAGLNQRNSPATPKTVTAAAAGQGKLKQNMLSPCQQQEADNTDMVDPWTLLEDGTSSGQSSSNALNSSDMGNLRATCWLKGAVRVRRTDLTYIGSVDEDS
Length2219
PositionKinase
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.272
Instability index49.48
Isoelectric point8.84
Molecular weight245901.45
Publications
PubMed=21873998

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30964
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     320.19|     104|     378|    1598|    1819|       1
---------------------------------------------------------------------------
   69-  182 (162.73/68.57)	PTSSSPE..ENlTKEYIQFGYKETvdgLKEADEIILTQ..VHTFSKPV...VLKCKESVRKCFRAINESRALKRK...AGQVYGVPLsgsllgKPGFPEQKS.CGEETKKKWIESLSQQHKRLRS
 1697- 1811 (157.46/262.76)	PTSEKPEasEN.EKNFIQILLTRL...LVRPDAVPLFSevVHLFGRSVedsMLKQAEWFLAGPDVLLGRKTIRQKliiVGESKGLPT......KPQFWKPWGwCSNSSSDPITANKAGKKRKLES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.33|      25|      91|    1503|    1544|       2
---------------------------------------------------------------------------
 1465- 1491 (40.74/40.37)	SIEVYVHWFRLLV.GNC.KTVSEGmvLEL
 1518- 1544 (36.59/21.99)	SIIAFVLWRPLLSsGNSnSSVHED..THR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.35|      39|      92|     881|     925|       5
---------------------------------------------------------------------------
  881-  920 (62.04/46.89)	KGFKTVEPSLKVDPLMEITKQVPRGRQKMVRKTQSLaQLQ
 1914- 1952 (66.31/35.55)	KGLRGGSPSLARRSSINTTDTAPPPSPAALRASMSL.RLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.32|      16|     287|    1290|    1331|      10
---------------------------------------------------------------------------
 1271- 1286 (26.75/31.36)	GAAQEGDPSLV.SSAVS
 1305- 1321 (24.57/25.57)	GNVHQNRPSGVgSSNIA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.40|      18|      22|     973|     992|      12
---------------------------------------------------------------------------
  975-  992 (30.40/23.89)	LKQL.QFVDKRSIAVWLVN
  994- 1012 (24.99/10.73)	VRQLvEESEKSSVRVGQFN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.61|      19|      22|     453|     473|      13
---------------------------------------------------------------------------
  453-  473 (26.57/27.59)	ISTqFQgRGVDSRFGFLSFDY
  475-  493 (32.04/20.84)	IST.IQ.RSADDLAKIASAGY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.16|      18|      22|    1069|    1090|      14
---------------------------------------------------------------------------
 1073- 1090 (32.55/27.13)	LVIMPRNVENNVCE...VGEA
 1092- 1112 (25.61/ 9.30)	LVSSLRRYENILFSadlVPEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     174.23|      57|     376|    1598|    1656|      19
---------------------------------------------------------------------------
 1598- 1656 (89.24/63.05)	H.LKSVAFAPLRARLFLNSVIDCKvPSSGYShEAVCESKKRHQG....NGTKLVDKLVSVLDCL
 1972- 2033 (84.98/51.19)	HtLASTIVRLLGSRVVYEDSAACS.PRSDVS.KAETESTRDPSSmadlSSDVLFDRLLFVLHGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.43|      17|     380|     804|     834|      24
---------------------------------------------------------------------------
  806-  823 (26.23/37.63)	PDVScGVKNSVRDEFQSS
  947-  963 (31.20/ 6.50)	PGVE.GVNHKVVDVFRTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.96|      11|     984|    1054|    1064|      25
---------------------------------------------------------------------------
 1054- 1064 (21.92/10.22)	WLLPKAKSSPS
 2041- 2051 (22.04/10.32)	WLLPRSSSNDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.75|      10|      22|     346|     355|      30
---------------------------------------------------------------------------
  346-  355 (17.84/10.31)	LLPIVYGFLE
  367-  376 (15.91/ 8.43)	LVAIAVRFIE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30964 with Med12 domain of Kingdom Viridiplantae
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