<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30955

Description Uncharacterized protein
SequenceMEPSTKPGPSQVADVVFVIEGTANLGPYFESLRKNYILPAIEYFNGGPPAETDFGGDYGGTQYGLVVFNTVDCAPESYVQCHAPTSSAFEFVSWIDSIQFMGGGAESCSLIAEGLSVALQLFDDFKKMREQIGQTHKVCVLLCNSPPYLLPAVESVSYTGFTADNLVKIIRDRGIHFSVVAPRKLPALRALFEWASPVTGAVEPHPDYSQDPFHMVLVRGISLPGETNICCRLVVFVFFLPVTGITGGQFQNQSISSVPGSKHGPPSLPTVTTVNQPMTQQVPPNSQQTVPPPGQLVVSQPVQPQPQPNQPPAVPPGQVNANQMGQPQGVANKVVAWTGVLEWQEKPKASSMDSTKLTRSLPCQVYVNQGENLNTDQWPQKLIMQLIPQQLLTTLGHLFRNSRMVQFLFTSKDMDSLRGLYRIMANGFAGCVHFPHTTSPCEVRVLMLLYSSKKKIFMGLIPNDQSGFVNGIRQVITNHKQVQQHRAPNQVPTNQNFLNRPPGPIPVSHGNVQQAAGPTNQQPPVSGAPPNQVAQGGQTQPQGSILRLPNPGANPQLRSLLLSQQQPQGGVSHMPNMMSHQALGQQMVHPAPGGGPQIQNQWRQPMSGQMLMSGGQRGPIPQPGMPQVPNITDEDVIRDLL
Length641
PositionUnknown
OrganismXiphophorus maculatus (Southern platyfish) (Platypoecilus maculatus)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Ovalentaria> Atherinomorphae> Cyprinodontiformes> Poeciliidae> Poeciliinae> Xiphophorus.
Aromaticity0.07
Grand average of hydropathy-0.273
Instability index46.16
Isoelectric point8.01
Molecular weight69646.78
Publications
PubMed=23542700

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30955
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     199.18|      23|      23|     492|     514|       1
---------------------------------------------------------------------------
  259-  281 (27.89/ 7.31)	PGSK....HGP.P..SlptV........TTV..NQPMTQQ
  283-  305 (40.90/14.39)	PPNS.QQTVPP.P..G...Q........LVV..SQPVQPQ
  306-  328 (26.14/ 6.36)	P..QpN...QP.P..A.vpP........GQVnaNQMGQPQ
  492-  514 (43.10/15.59)	PTNQ.NFLNRP.P..G...P........IPV..SHGNVQQ
  518-  540 (31.73/ 9.40)	PTNQ.....QP.PvsG.apP........NQV..AQGGQTQ
  598-  627 (29.42/ 8.15)	I..Q.NQWRQPmS..G...QmlmsggqrGPI..PQPGMPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.51|      26|      43|     173|     200|       3
---------------------------------------------------------------------------
  173-  200 (41.27/35.80)	RGIhfSVVAPRKLPALRALFEWASPVTG
  219-  244 (48.24/33.52)	RGI..SLPGETNICCRLVVFVFFLPVTG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     254.17|      81|     322|      38|     128|       4
---------------------------------------------------------------------------
   38-  128 (134.53/134.28)	LPAIEYFNGGPPAETDFGGDYGGTQygLV...VFNTVD..CAPESYVQchaptssaFEFVSW.IDSI....QFMGGGAESCSLIAEGLS.....VALQLFDDFKKM
  361-  456 (119.64/93.12)	LPCQVYVNQGENLNTDQWPQKLIMQ..LIpqqLLTTLGhlFRNSRMVQ........FLFTSKdMDSLrglyRIMANGFAGCVHFPHTTSpcevrVLMLLYSSKKKI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30955 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QNQSISSVPGSKHGPPSLPTVTTVNQPMTQQVPPNSQQTVPPPGQLVVSQPVQPQPQPNQPPAVPPGQVNANQMGQ
2) TNHKQVQQHRAPNQVPTNQNFLNRPPGPIPVSHGNVQQAAGPTNQQPPVSGAPPNQVAQGGQTQPQGSILRLPNPGANPQLRSLLLSQQQPQGGVSHMPNMMSHQALGQQMVHPAPGGGPQIQNQWRQPMSGQMLMSGGQRGPIPQPGMPQVPNITDEDVIRDL
251
477
326
640










Molecular Recognition Features






MoRF SequenceStartStop




NANANA