<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30951

Description Uncharacterized protein
SequenceMKVVNLKQAILQAWKERWSDYQWAVNIKKNFPKGATWDYLNFAEALMEQAMIGPSPNPLILSYLKYAISSQMVSYSSVLTAISKFDGFSRELCVKSLLEIMDMFCHRLNCHGKAEECIGLCRALLGVVVWLLQGCAFYCDQLRELGPSASTEAILRACQERLHGLISSTKNKALVHIARLEDPGSWGNVEETMIAVTDGLCNVPNGTLRTSIEETLALVKSIPLMLSAQSEPPPHASFPSVHAFIMLEGTMNLTGETQPLVEQLMMIKRMQRIPGPLFVLEIWKACFTGLIESPEGTEELKWTAFTFLKIPQVLLRLKKYPQGDKGQDFTEEVNIAFQYLLKLTPLLDKADQRCNCDCLGMLLQECNKLGLLSDSNTEVLTSKRNEDREFAPRLKTAENANIQPNPGLILRAEPTVTNILKTVDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFIKLNEFPKHISGEGSKSASVRAQLFDISFLMLCHVVQTYGSEVILSDPSPSVETPFFETWLQTCMPEEGKTLNPDHPCFRPEPGKVESLVTLLNNSSEMKLVQVKWHEICLSTPAAILEVLNAWENGVLSVEAVQKITDNIKGKVCSMAICAVAWLVAHVRMLGRDEREKPQTMIRQLVTPLYAENTMQFYNERVVIMSSIMEHMCADVFQQTGAMLRSPIEGQEPIAYRNLLPPKEPIHHSLSKQFQVVLRKGWVDSRALHLFESLLNMGGVFWFTNNLIKELLKETRQEWATRVVELLYSIFCLDMQQITLTLLGTILPNLLTDSAHWHSLADPPGKALAKLSVWCALSSYSSHHKGPFSARQRKRQREDIEDYNSLFPLDDTQPSKLMRLLSSNEDEPVALSSPGDRSMSSSLSPSQLHTVNMRDPLNRVLANLFLLFSSILGSKMAGPHTQFVQSFLEECVECLEQGSRGSILQFMPFTMMSELVKLPALAKPKVVLAITDLNLPLGRRVAAKAISAL
Length989
PositionTail
OrganismXiphophorus maculatus (Southern platyfish) (Platypoecilus maculatus)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Ovalentaria> Atherinomorphae> Cyprinodontiformes> Poeciliidae> Poeciliinae> Xiphophorus.
Aromaticity0.07
Grand average of hydropathy-0.040
Instability index48.66
Isoelectric point6.56
Molecular weight110483.31
Publications
PubMed=23542700

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
enteric nervous system development	GO:0048484	IEA:Ensembl
interstitial cell of Cajal differentiation	GO:0061453	IEA:Ensembl
retinal cone cell development	GO:0046549	IEA:Ensembl
thymus development	GO:0048538	IEA:Ensembl









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30951
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     154.92|      49|     222|     204|     256|       2
---------------------------------------------------------------------------
  204-  256 (77.13/54.91)	PNGTLrtSIEETLALVKSIPLMLSAQSEPPPHASFPsvHAFIML.EGTMNLTGE
  431-  480 (77.80/44.56)	PEGLL..GVLGHMLSGKSLDLLLAAAAATGKLKSFA..RKFIKLnEFPKHISGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.82|      26|      31|      87|     112|       4
---------------------------------------------------------------------------
   87-  112 (50.34/30.25)	GFSREL..CVKSLLEIMDMFCHRLNCHG
  119-  146 (44.48/25.92)	GLCRALlgVVVWLLQGCAFYCDQLRELG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.10|      17|      35|     297|     314|       6
---------------------------------------------------------------------------
  297-  314 (24.94/20.66)	TEELKwTAFTF.LKIPQVL
  330-  347 (25.16/14.01)	TEEVN.IAFQYlLKLTPLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.65|      10|      35|     484|     493|       7
---------------------------------------------------------------------------
  484-  493 (16.72/10.55)	SASVRAQLFD
  516-  525 (18.93/12.98)	SPSVETPFFE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.05|      17|      20|     861|     879|       8
---------------------------------------------------------------------------
  861-  877 (28.67/25.64)	LSSNEDEPVALSSPGDR
  883-  899 (30.38/18.19)	LSPSQLHTVNMRDPLNR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30951 with Med24 domain of Kingdom Metazoa
Unable to open file!