<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30880

Description Uncharacterized protein
SequenceMKVVNLKQAILQAWKERWSDYQWAINMKKFFPKGATWDILNLAEALLEQAMIGPSPNPLILSYLKYAISSQMVSYSSVLTAISKFDDFSRDLCVQALLDIMDMFCDRLSCHGKAEECIGLCRSLLSALHWLLRCTAASAERLREGLEAGTPAAGEKQLAMCLQRLEKTLSSTKNRALLHIAKLEEASLHTSQGLGQGGTRANQPTASWTAIEHSLLKLGEILASLSNPQLRSQAEQCGTLIRSIPTMLAVHSEQLHKTGYPTVHAVVLLEGTMNLTGETQPLVEQLMMVKRMQHIPTPLFVLEIWKACFVGLIESPEGTEELKWTAFTFLKIPQVLVKLKKYCHGDKDFTEDVNCAFEFLLKLTPLLDKADQRCNCDCTKFLLQECSKQGLLSEASVTNLMAKRAADREHAPQLKSGENANIQPNPGLILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFINLNEFTTHGNEELAKAASVRALLFDISFLMLCHVAQTYGSEVILSESSSGAQVPFFETWMQTCMPEEGKILNPDHPCFWPDSTKVESLVALLNNSSEMKLVQMKWHEACLSISAAILEILNAWENGVLAFESIQKITDNIKGKVCSLAVCAVAWLVAHVRMLGLDEREKSLQMIRQLAGPLYSENTLQFYNERVVIMSSILEHMCADVLQQTATQIKFPSTGVDTMPYWNLLPPKRPIKEVLTDIFGKVLEKGWVDSRSIHIFDTLLHMGGVYWFCNNLIKELLKETRKEHTLRAVELLYSIFCLDMQQVTLVLLGHILPGLLTDSSKWHSLMDPPGTALAKLAVWCALSSYSSHKGQASSRQKKRHREDIEDYISLFPLDDMQPSKLMRLLSSNEEDANVLSSPTDRSMSSSLSASQLHTVNMRDPLNRVLANLFLLISSILGSRTAGPHTQFVQWFMEECVDCLEQGSRGSILQFMPFTTVSELVKVSAMSSPKVVLAITDLSLSLGRQVAAKAIAAL
Length1008
PositionTail
OrganismFelis catus (Cat) (Felis silvestris catus)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Laurasiatheria> Carnivora> Feliformia> Felidae> Felinae> Felis.
Aromaticity0.07
Grand average of hydropathy0.012
Instability index45.79
Isoelectric point6.49
Molecular weight112019.99
Publications
PubMed=17975172

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30880
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     585.45|     208|     266|      78|     324|       1
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   44-  279 (296.42/274.01)	EALLEQAMIGPS....PNPLIL..................SYLKYaissqmvsyssVLTAISKF...D.DFSRDL.C.......VQALLDIMDMFCDrLSC.HGKAEECIGlcRSLLS..ALHWLLRCTAASAERLREgLEAGTPAAGEKQLAMCLqRLEKTLSST.KNRALLHiAKLEEASLHTSQGLGQGGT.....RANQPTASWTAIEHSLLKLGEiLASLSNPQLrSQAEQCGTLIRSIPTMLAVHSEQlhktGYPTvhAVVLLEGTmnlTGET
  280-  540 (289.03/249.98)	QPLVEQLMMVKRmqhiPTPLFVleiwkacfvgliespegtEELKW.taftflkipqVLVKLKKYchgDkDFTEDVnCafefllkLTPLLDKADQRCN.CDCtKFLLQECSK..QGLLSeaSVTNLMAKRAADREHAPQ.LKSGENANIQPNPGLIL.RAEPTVTNIlKTMDADH.SKSPEGLLGVLGHMLSGKSldlllAAAAATGKLKSFARKFINLNE.FTTHGNEEL.AKAASVRALLFDISFLMLCHVAQ....TYGS..EVILSESS...SGAQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     499.82|     161|     194|     566|     734|       2
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  566-  734 (244.48/206.71)	FWPDSTKVESLVALLNNSSEMKLVQMKWHEACLSISAAILEILNAWENGVLAFES.IQKITDNIKGKVCSLAV.CAVAWLVAHVRMLGLDEREKSLQMIRQLAGpLYSENTLQfyNERVV.IMSSiLEHMcADVLQQTATQIKFPSTGVDTMPYWNLlppKRPIKEVLTDIF
  761-  924 (255.33/182.99)	YWFCNNLIKELLKETRKEHTLRAVELLYSIFCLDMQQVTLVLLGHILPGLLTDSSkWHSLMDPPGTALAKLAVwCALSSYSSHKGQASSRQKKRHREDIEDYIS.LFPLDDMQ..PSKLMrLLSS.NEED.ANVLSSPTDRSMSSSLSASQLHTVNM...RDPLNRVLANLF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30880 with Med24 domain of Kingdom Metazoa
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