<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30874

Description Prostate tumor overexpressed 1
SequenceGPAPASPSPGLGSLSAAPSSQGARVFGALGPIGPSSPGLALGGLAVGEHRLSNKLLAWSGVLEWQEKRRPYSDSTAKLKRALPCQAYVNQGENLETDQWPQKLIMQLIPQQLPPWAPLFRNSQLAQFHFTNRDCDSLKGLCRVMGNGFAGCMLFPHISPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNAIRQVITTRKQAVGPGGVAGPVQIVNNKFLAWSGVMEWQEPRPEPNSRSKRWLPSHVYVNQGEILQRLAKTQLPDPRPLTTLVPLFRNSRLVQFHFTKDLETLKSLCRIMDNGFAGCVHFSYKASCEVRVLMLLYSSEKKIFIGLIPHDQSNFVNGIRRVIANQQQVLQRNLEQEQQQRGVRPGPPPPTPPPTSQVPATDTAPLPSPPQMGG
Length401
PositionUnknown
OrganismFelis catus (Cat) (Felis silvestris catus)
KingdomMetazoa
Lineage
Aromaticity0.07
Grand average of hydropathy-0.289
Instability index52.85
Isoelectric point9.82
Molecular weight44215.63
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30874
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     445.25|     121|     153|      79|     200|       1
---------------------------------------------------------------------------
   79-  130 (74.13/41.15)	...........................................................................................................KRALPCQAYVN..QGENLE...TDQWPQKLIMQLIPQQLPPWAPLFRNSQLAQFHFT
  132-  286 (204.94/130.76)	RDCDSLKGLCRVMGNGFAGCMLFPHISPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNAIRQVITTRKQavgpggvagpvqivnnkflawsgvmewqeprpepnsrsKRWLPSHVYVN..QGEILQrlaKTQLPD.......PRPLTTLVPLFRNSRLVQFHFT
  287-  380 (166.18/100.42)	KDLETLKSLCRIMDNGFAGCVHFSYKASCEVRVLMLLYSSEKKIFIGLIPHDQSNFVNGIRRVIANQQQ.................................................vlQ.RNLE...QEQ.QQRGVRPGPPPPTPP................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     123.82|      32|     160|      42|      74|       2
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   42-   74 (58.14/37.29)	GGLAVGEHRLSNKLLAWSGVLEWQEKRrPYSDS
  205-  236 (65.68/38.14)	GGVAGPVQIVNNKFLAWSGVMEWQEPR.PEPNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.16|      11|      27|       1|      11|       3
---------------------------------------------------------------------------
    1-   11 (23.02/10.11)	GP.APASPSPGL
   30-   41 (18.14/ 6.43)	GPiGPSSPGLAL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30874 with Med25 domain of Kingdom Metazoa
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