<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30860

Description Mediator of RNA polymerase II transcription subunit 17 (Fragment)
SequenceMSERQFNIDLELNEVDIIDPFLQDDKLKLEELIPRILIERKSFINITEESLRKEIENATKPPDDSLLEPEETPTVETTPEAVDEQEEFNKQKFELSKNINFALNETQLSLDFVSLLISSVKPNLAKSTISPHLSKFAKPTSLNSDRLGQEESSREQDNKKSANLGQGWKLNSLNKITDLFREASVNLNDQVIKERRYWNMINLVLANDEALFRMRDPANNARAIGVKYGYGDSGSNYHDKGLALLRKDNQTGEISFHAISSLSSAKVVEKVNKFIRVKILSQIDGDYMLTGQSVFQFDFKKSKQNIINDIEKARFFLFEEDLFHQLIREAKLLVNYNVSIISNKIIIEIHNVIIEIESIVYDELNEEELENYYQNISEYSSLNNLKCQSILNYLKLMLCCYYKYNLKLKQKVPTSLTKWKQNNSHPLLLRPLVGNMRHELNLQNMQSILNRLVQKFNGKLKYSKLDVGKFVNLAARTKKQNPFQKSIEKPVSKFDLVLHNDSSNVMAIKVQLTTNELFVNLIINLSIIRFQNVDDFEKNVNGINVLQLGFSDFNEIEECLDWSIQKFV
Length568
PositionHead
OrganismCandida maltosa (strain Xu316) (Yeast)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Debaryomycetaceae> Candida/Lodderomyces clade> Candida.
Aromaticity0.08
Grand average of hydropathy-0.422
Instability index45.93
Isoelectric point5.83
Molecular weight65708.23
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30860
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     148.83|      48|      57|     388|     444|       1
---------------------------------------------------------------------------
  388-  444 (73.43/64.68)	QSILNYLKLmlccyyKYNLKLKQK.......VPTSLTKWKQNNSHPLLLRPLvgnMRHELNLQN
  446-  500 (75.40/44.04)	QSILNRLVQ......KFNGKLKYSkldvgkfVNLAARTKKQNPFQKSIEKPV...SKFDLVLHN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.65|      21|     317|     200|     232|       2
---------------------------------------------------------------------------
  179-  199 (36.87/46.57)	LFREASVNLNDQVIKER.RYWN
  211-  232 (32.79/22.48)	LFRMRDPANNARAIGVKyGYGD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.86|      27|      36|     504|     530|       3
---------------------------------------------------------------------------
  504-  530 (44.19/30.15)	NVMAIKV.QLTTNELF.VNLIINLSIIRF
  539-  567 (40.67/27.14)	NVNGINVlQLGFSDFNeIEECLDWSIQKF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.01|      32|      49|     304|     335|       5
---------------------------------------------------------------------------
  304-  335 (54.79/27.33)	QNIINDIEKARF.FLFEEDL..FHQLIREAKLLVN
  350-  384 (46.22/22.17)	HNVIIEIESIVYdELNEEELenYYQNISEYSSLNN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30860 with Med17 domain of Kingdom Fungi
Unable to open file!