Description | Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MQNYDTHVLQWSQPQVAGRLTQITSIPPYTELDSKGRPKFTDEQILAQVSELSVVNSRAGFFVWLSAALSARPLTDDMTILSYLQGRYPNDMQLLVVDLLVASFDVLTNSLLTKAKPQYHRVIRSFIVNKVPILITRVQANMQAAVTTEACIQMAMMPGGLITVNPLPPMTADSNAVGDYLKGTRLDFLQACALHGLVTEGAISAILQESVALSRIQKLNKDSLVGQCTSNISKIGELFEDLSGMQGNAGAIASCIVETIGNLCLSKDTISLKSVCDRLVKRIPLMDYIMLFAQPGVLLLPVCNLLNNWVHDQDQTEFTPAYEEFASVLLFALSVIHRYNLKFTDIGVQGDSFIAKLLDDMTVSKPTTELSAEQGSQLGKWLEGLFTVDEHGEPSGISDEVMRQCPPQSFYQLVPTLLEQSILACKASALKMKTFKGGLELLLEPFLLPSLIMGLGWLAGHSWEDHNDADVLLQVLEKLLRHSSSSQETQAMHRAVLAIVADSLHSSLEEFSKKQPSKKQVTELLKLLGPYVNEQRTFRCTQAEIDLIINQGGMKNLIRQTVRDVINWGATQSNPPNPPPRYAHRFFVAACQTLDDQEILKTLVEEVLQSGPANMSIALDLCTGLICAPTAGPLSMQSPSAAASSAAKLRDCVRLTNSNVQGLLERPVSEAEVLVRLGRRVEAQLAFAAQMPPMALPLQIPEQAADQMLQDLLDGNTASATNDGALNQNTDMSGLEQQIDMTSINNATADDLLKMASGPGAMDVDSNQMFIELGMNTDDKQQNQQGDLQNQEEDIFAGLDMGMGDMGDDLDFNFG |
Length | 815 |
Position | Tail |
Organism | Pseudocercospora fijiensis (strain CIRAD86) (Black leaf streak disease fungus) (Mycosphaerella fijiensis) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Dothideomycetidae> Mycosphaerellales> Mycosphaerellaceae> Pseudocercospora. |
Aromaticity | 0.06 |
Grand average of hydropathy | -0.047 |
Instability index | 44.28 |
Isoelectric point | 4.72 |
Molecular weight | 89132.12 |
Publications | PubMed=23236275 |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP30834 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 326.91| 94| 294| 342| 440| 1 --------------------------------------------------------------------------- 214- 252 (35.83/12.86) ..........SRIQKLNKDSLVGQCTSNI.....SKIGELFEDLSGM..QGNAGAI............................................ 342- 440 (151.36/89.50) KFTDIGVQGDSFIAKLLDDMTVSKPTTELsAEQGSQLGKWLEGLFTVDEHGEPSGISdevmRQCPPQSFYQLVPTLLE.QSILACKASALKMKTFKGGLE 648- 736 (139.73/72.24) KLRDCVRLTNSNVQGLLE.....RPVSE..AEVLVRLGRRVEAQLAFAAQMPPMALP....LQIPEQAADQMLQDLLDgNTASATNDGALNQNTDMSGLE --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 82.52| 26| 145| 592| 617| 2 --------------------------------------------------------------------------- 592- 617 (42.82/27.54) QTLDDQEILKTLVEEVLQ..SGPANMSI 737- 764 (39.70/25.01) QQIDMTSINNATADDLLKmaSGPGAMDV --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 56.12| 16| 140| 18| 34| 3 --------------------------------------------------------------------------- 18- 34 (25.64/16.30) GRLTQITSIPPYTElDS 159- 174 (30.47/15.53) GGLITVNPLPPMTA.DS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 47.88| 13| 25| 767| 779| 5 --------------------------------------------------------------------------- 767- 779 (23.97/14.74) NQMFIELGMNTDD 793- 805 (23.91/14.68) EDIFAGLDMGMGD --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) DDLDFNFG 2) DLQNQEEDIFAGLDM | 808 787 | 815 801 |
© 2021 Shailesh Lab
Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab