<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30803
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MDSMVKEWTVLLHRCLERRVHSDVFAAAVAQLHAKSPLPGRKLAALLLRPRVADNSNIDPRIVIYLEQLLSLKKLDASDVLIVALLYSKVRLPVKTEEKSSKDAQWSNPPELEELIFHRLHKVFAAEERPVNNVEGVHTLAVVARWMQAMVTSHTSDTMIQAMAGIQQPQQQSINVREGLAMLVVGVIENSKILRILNHPKAKEVRKELTKSLSSFIPFLSNNSVGSQTSLSLANRLEISQKQHDLYEKLPNVNGEGNESAGLEVAALQLDAVMELPQANTRAGLYVFLNSLLVARPLTDDFVIISHLHTRYKLEPQNMATELITAAFDILANAMYRNEPTQTLFYLKSFLINKIPTLLTQISGSIFPMTVEMCITQALSHVDPNAFPSFSQGFDDIMGSNNSLSDVRQDYLNACVLHGLLPAGTVERLLGEAPMQGPPAKRYERKELFNQCKLNFDKVSVYIDELENLDGNAGAIVAAIADFISHLCDTQTTMYLKQLCCLIFKKPQAMDVMLQFTSPASILRPLCQFLEDWHYDSDQGEYQPVYDEFGAILVLIMAFVYRYDLVCHDIGIAHDTFIAKLLQHGHHSIPPDELTEEQGGHLGSWLKGLYDSDKEGLSNEVFASCRPQDFYLIVPTLFHQTVAACSLGVLSFETVKGGLEYLGETFLMPSLIGGLTWMASYALLQTHNDLDAITRIFNAILLSAPSSGDAQAMHSTIIAMVSSRLEKCFRTLQRREPNRNNLDSFLQAIKVHTHYERTVFATMKELDQWTNAPNSTLNTSLRHTVQQLSQWASTASMQPNPPSYTHRQLYASLKMLGAARTLRAIVDELKTQTDSGNGAAALDVGVSIVCAPTVEDSPISVDWVGSTVPAPTPQRTRMNLREMLKQDFDNAASLVATDPLTAETIVRLHRRVEAHFTSLAESGLQAPPINIPSVNITDMQSQSISEHLNRAMDDAAAASMVEDISNMDNKALQRSMDELASTEGLDLSGIGMGNGDAGTGDMSTDLGNLPDLDLGDMGGMGIDMDMNMDMGGGGGGDDDWGLDFDNM |
Length | 1047 |
Position | Tail |
Organism | Cochliobolus sativus (strain ND90Pr / ATCC 201652) (Common root rot and spot blotch fungus) (Bipolaris sorokiniana) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes>
Pleosporomycetidae> Pleosporales> Pleosporineae> Pleosporaceae> Bipolaris.
|
Aromaticity | 0.06 |
Grand average of hydropathy | -0.114 |
Instability index | 40.09 |
Isoelectric point | 5.13 |
Molecular weight | 115587.60 |
Publications | PubMed=23236275
PubMed=23357949
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP30803
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 58.95| 17| 74| 530| 546| 1
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530- 546 (35.89/25.23) LEDW...HYDSD.QGEYQPVY
602- 622 (23.06/13.46) LGSWlkgLYDSDkEGLSNEVF
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 128.47| 38| 75| 930| 969| 2
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930- 969 (60.54/40.27) NIPSVNITDMQSQSISEHLNraMDDAAAASMVEDIS.NMDN
1008- 1046 (67.93/39.72) NLPDLDLGDMGGMGIDMDMN..MDMGGGGGGDDDWGlDFDN
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 127.39| 41| 149| 312| 356| 4
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312- 356 (66.55/52.44) YKLEPQNM...ATELITAAFDILANAMyrnePTQTLFYLKSF..LINKIP
462- 507 (60.85/38.11) YIDELENLdgnAGAIVAAIADFISHLC....DTQTTMYLKQLccLIFKKP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 52.43| 16| 53| 22| 39| 5
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22- 39 (24.72/23.12) SDVFaaAVAQLHAKSPLP
78- 93 (27.71/18.58) SDVL..IVALLYSKVRLP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 60.94| 18| 27| 237| 254| 6
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237- 254 (31.56/21.71) LEISQKQHDLYEKLPNVN
263- 280 (29.38/19.69) LEVAALQLDAVMELPQAN
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 75.54| 26| 27| 866| 891| 7
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871- 897 (38.99/25.09) PTPQRTRMNLREMLKQDFDNA.aSLVAT
899- 926 (36.55/23.06) PLTAETIVRLHRRVEAHFTSLaeSGLQA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 36.19| 10| 27| 373| 382| 9
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373- 382 (18.68/10.33) MCITQALSHV
398- 407 (17.51/ 9.27) MGSNNSLSDV
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