<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30799
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MDGASYNMDVDDLFGDSEHVNIQTINTTPPVKGRDARIDELGSTGCCQKISWSKNGCVAYITPDGYSVNLKIFSRNPETGKWALGKTVPLELPHGSEVFPLIHLSWSHLGNDLAVMDQAGRVMIFSCAMALDRMHFARAEIAHPESEVDAVVGMHWLAILPYAQKNLIAWSAAREGNKWKWNIRQHLFNNAHHPVDGKASLIYLKRYGELKLRFQQNDNNWQETSTQLGPMISTKESFTHAAFASNNDNTLLLAAYDVKRRLHLYRVETIWNVPADKRSQNAGPFEKPAIQVSLLALEDTCNPVDMATDELSNGGTSESAAAAAAQLTHLDFLPVTPQQDDGSVPTIQAIFCKPPNPISYDMNPQETRYSIIVKWQVHQEQQNQLHPSLEQVTSKKKSVSSLPAQTTFLLKRQPDAALHSVVLDFYPMWYNMLLAFCYSDGLIEFRKRSTMEVIMPDDNTDNVTSLLQAGFVFQHAEPSLHVAFSPNHCVAVGMQLDGTTKLRLMEYTHGTLSAEDDDPHHSAALAALILQSSSAANQYFSSDDIFAIIDSMSDKRKQDFITLLFEGLQVNIDCGIDDSSTNHFILLGRSPFFVKTLSAMHLLGLQGTINRTLVSKTAWQILNIKYVTQILTTIVRMHGDVSKINLRPEAVPQMIGTIRWTMHFMAYILDDLFALGRALSDIPPADLTRDVLESKIKETNKPAILLLLSAFPRAMMKLWAQPIQWVKRSAESHATNPSAPGGPVPVQSPESKRLYTPLLSAVSELPFEWRWFEVLVTETTAHTRAIYKQRNLNDAQRNSIEREILLGKIPDILFPVAKRLVTDALWNSNQQNSCLADKLDMGKLMFFDTTWLGFTDSKRARVWHDEHVVDVCQKMIIRGVGTWVHPVNTSGHHLMGGRGRSDSLQSAAGGAGGASAGGAGTVNGESGSERKGRNMLRQCVRCGACMEDVVPGLQGYTIHHYQWLVGVSKHCVCGNSWMLVETKPSLK |
Length | 987 |
Position | Tail |
Organism | Cochliobolus heterostrophus (strain C5 / ATCC 48332 / race O) (Southern corn leaf blight fungus) (Bipolaris maydis) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes>
Pleosporomycetidae> Pleosporales> Pleosporineae> Pleosporaceae> Bipolaris.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.226 |
Instability index | 43.55 |
Isoelectric point | 6.48 |
Molecular weight | 109920.18 |
Publications | PubMed=23236275
PubMed=23357949
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP30799
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 72.70| 22| 110| 677| 698| 1
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677- 698 (35.85/23.82) RALSDIPPADLTRDVLESKIKE
790- 811 (36.85/24.68) RNLNDAQRNSIEREILLGKIPD
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 150.61| 47| 272| 198| 249| 2
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198- 249 (75.99/63.91) KASLIYLKRYGELKLRFQQNDN...NWQ.ETSTQLGPMistkeSFTHAAFASNNDN
468- 518 (74.63/51.54) QAGFVFQHAEPSLHVAFSPNHCvavGMQlDGTTKLRLM.....EYTHGTLSAEDDD
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 141.75| 44| 272| 35| 78| 5
---------------------------------------------------------------------------
35- 78 (80.72/49.78) DARIDELGSTGCCQKISWSKNGCVAY....ITP...DGYSVNLK.IFSRNPE
305- 356 (61.03/35.90) DMATDELSNGGTSESAAAAAAQLTHLdflpVTPqqdDGSVPTIQaIFCKPPN
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 167.03| 48| 719| 106| 154| 7
---------------------------------------------------------------------------
106- 154 (81.24/61.47) WSHLGNDLAVMDQ..AGRVMIFSCAMaLDRMHFARAEIAHPESEVDAVVGM
826- 875 (85.79/60.40) WNSNQQNSCLADKldMGKLMFFDTTW.LGFTDSKRARVWHDEHVVDVCQKM
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 84.21| 24| 656| 79| 102| 8
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79- 102 (44.08/30.03) TGKWALGKTVPLELPHGSEVF.PLI
735- 759 (40.13/26.60) TNPSAPGGPVPVQSPESKRLYtPLL
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