<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30793
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MDGASYNMDVDDLFGDSEHVNIQTINTTPPVKGRDARIDELGSTGCCQKISWSKNGCVAYITPDGYSVNLKIFSRNPETGKWALGKTVPLELPQGSEVFPLIHLSWSHLGNDLAIMDQAGRVMIFSCAMALDRMHFTRAEIAHPESEVDAVVGMHWLAILPYAQKNLIAWSAAREGNKWKWNIRQHLFNNAHHPVDGKASLIYLKRYGELKLRFQQNDNNWQEASTQLGPMISTKESFTHAAFASNNDNTLLLAAYDVKRRLHLYRVEMIWNVPADKRSQNAGPFEKPTIQVSLLALEDTCNPVDMANDELSNGGTSESAATAAAQLTHLDFLPVTPQQDDGSVPTIQAIFSKPPNPISYDMNPQETRYSIIVKWQVHQEQQNQLHPSLEQVTSKKKSVSSLPAQTTFLLKRLPDFALHSVVLDFYPMWYNMLLAFCYSDGSIEFRKRSTMEVIMPDDNTDNVTSLLQAGFVFQHAEPSLHVAFSPNHCVAVGMQLDGTTKLRLMEYTHGTLSTDDDDPHHSAALAALILQSSSAANQYFSSDDIFAIIDSMSDKRKQDFITLLFEGLQVNIDCGIDDSSTNHFILLGRSPFFVKTLSAMHLLGLQGTINRTLVSKTAWQILNIKYVTQILTTIVRMHGDVSKINLRPEAVPQMIGTIRWTMHFMAYILDDLFALGRALSDIPPADLTRDVLESKIKETNKPAILLLLSAFPRAMMKLWAQPIQWVKRSAESQAATTTNPSASVPVQSPESKRLYTPLLSAVSELPFEWRWFEVLVTETTAHIRAIYKQRNLNDAQRNSIEREILLGKIPDILFPVAKRLVTDTLWNSNQQNACLADKLDMGKLMFFDTTWLGFTDSKRARVWHEEHVVDVCQKMIIRGIGTWVHPVNTAGHHLMGRGRSDSLQSAGGGASGTANGDSGSERKGRNMLRQCVRCGACMEDVVPGLQGYTIHHYQWLVGVSKHCVCGNSWMLVETKPSLK |
Length | 979 |
Position | Tail |
Organism | Cochliobolus sativus (strain ND90Pr / ATCC 201652) (Common root rot and spot blotch fungus) (Bipolaris sorokiniana) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes>
Pleosporomycetidae> Pleosporales> Pleosporineae> Pleosporaceae> Bipolaris.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.232 |
Instability index | 43.96 |
Isoelectric point | 6.45 |
Molecular weight | 109589.87 |
Publications | PubMed=23236275
PubMed=23357949
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP30793
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 287.71| 95| 395| 336| 440| 1
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336- 440 (147.65/127.12) TPQQDDGSVPtIQAIFSKP.PNPISYDMN..PQETR.YSIIVkwqvhQEQQNQLHPSLEQVTSKKKSVSSLpaQTTFLLKRLPD..FAL.HSVVLDfyPMWYNMLLAFCYSD
736- 837 (140.06/91.91) TTTNPSASVP.VQSPESKRlYTPLLSAVSelPFEWRwFEVLV.....TETTAHIRAIYKQRNLNDAQRNSI..EREILLGKIPDilFPVaKRLVTD..TLWNSNQQNACLAD
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 88.22| 26| 167| 459| 492| 5
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461- 490 (37.86/41.78) DNVTSLLQaGFVFQHAEPSLHVAfspNHCV
939- 964 (50.36/24.81) EDVVPGLQ.GYTIHHYQWLVGVS...KHCV
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 64.09| 18| 126| 543| 560| 8
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543- 560 (32.36/23.81) DDIFAIIDSMSDKRKQDF
670- 687 (31.73/23.18) DDLFALGRALSDIPPADL
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