<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30792

Description Uncharacterized protein
SequenceMNQNFQGAPDRDDIRLLDQLRSQLMPMIKTMDRLQAEMQFKMSRGEAVDWPQIHRATTMVTNYITSIHLLINGGFRHQNKLVTQKQRIPSKDAAGNHILDAGGNEVFVERDVRRRLIATQPLPTNTEKFQALHPFPNPLYPMNAGGGMAAGMAGTLLRKRLEPMEEGWVEDKIRKAAEWLYIPEEWGVDMNKKVATNKQEKSEKEDDDEDDDAGVPESERLDSEAIPTTRVKDVLSGDAIKDVWQHAHQEVFDMKYLRQTYPASYPAEDAQDANEGEEEGDDDDDEEEGDNEEEEEEEFEDVMDTSGGQDAGDEESAKPKVMKKRKVVVGRLPVHQAVPGAPVFSLGVVQRFTETGEV
Length358
PositionHead
OrganismCochliobolus sativus (strain ND90Pr / ATCC 201652) (Common root rot and spot blotch fungus) (Bipolaris sorokiniana)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Pleosporomycetidae> Pleosporales> Pleosporineae> Pleosporaceae> Bipolaris.
Aromaticity0.06
Grand average of hydropathy-0.855
Instability index51.54
Isoelectric point4.62
Molecular weight40420.44
Publications
PubMed=23236275
PubMed=23357949

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30792
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     183.00|      56|      74|     181|     238|       1
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  181-  238 (90.90/48.13)	YIPEEWGVDMNKKVATNKQEKSEKEDDDEDDDAGVPESERLD..SEAIPTTRVKDvlSGD
  256-  313 (92.09/44.45)	YLRQTYPASYPAEDAQDANEGEEEGDDDDDEEEGDNEEEEEEefEDVMDTSGGQD..AGD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30792 with Med8 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KYLRQTYPASYPAEDAQDANEGEEEGDDDDDEEEGDNEEEEEEEFEDVMDTSGGQDAGDEESAKPKVMKK
2) NKKVATNKQEKSEKEDDDEDDDAGVPESERLDSEAIPTTRVKDVLSGDAI
255
191
324
240










Molecular Recognition Features






MoRF SequenceStartStop




1) AKPKVMKKRKVVVGRLPVHQAVP
317
339