<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30782

Description Mediator of RNA polymerase II transcription subunit 5
SequenceMSLSELARNSFQSGISASKWVQLCRLFINKNTTHRSPEETQADISNSVLLLFRDYPGDPTLQGYLRHAIQHGLISLPIFVSTFLPAARSPELHNSATLDMLCRVALDCHYATGLPPMGSLVPFSHSPVEILGTVVEAMALLRTAYSLPTAHFHQLTTSASELLLLLASCVPDVSPISTGQAMVYVADATDLITMFRLMPAVRQVLENLMLSLSLLLGEDAKVAREAQMMHTLQLAMGKGDILGSNSDSDIVTLSLFLNCLLFGRATEFGPGDTRHVTAALVGLLRWSSWTLNVFCTQLLLTSLTLIAQSAELGATTKSTGMWRAFTLGRLPHLLAAFRKAAVSEVITEAESYIAIQSALSSVIHRPGLIEKCEWSSSVATSETSSDKTNSTRSFLRELLYQFVSVGLIDASFAIGVDPMFTPEFQPRVYTEVQEAGSDIETYIDSKLSTDLKLDDAMSLVRKIWREPCCHAIFAEVVRKRFVSLPNSHDIEALSCVCKLLYSCEFALEIVSMQTLLPELVAHAIALVEEYDCETVGDPQTAVSHLGDVVLFAQSTIARFNLSQPTFPVKGRSVSPRCLHSAALVHRIGELDNEDTTAFQNWSRALFDSSIEGIEDTILRSTRPKTLLRIAATLFSHAIEACHARKMDKEVLNNGISYFLGPLLNWTLTGVIKSLVLEIQRRNFNAPMHLEVLQTLLLSQACPQVVVNLSAPNVLRLFYGQKIPQLGPKTTPFDSSSIQRIALEALGKNVDVLENNGSSSIPGVGAIWSDRPREAIREALTAARAGHAPSLDVNRCLLYGTPSDFLQILWDALMEAASMGDMEAPKRVATFVLTVPRTPRSPPLLPIFLHTVLLPIVATADHISTTEQTMTVELLVSIISSSLTAALHLEWALLTVCEEERFALGQSASAMARRLAGDLRKKGQGPTSRVILQRLASSGPFVANFPIFMADA
Length951
PositionTail
OrganismCeriporiopsis subvermispora (strain B) (White-rot fungus) (Gelatoporia subvermispora)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Polyporales> Gelatoporiaceae> Gelatoporia.
Aromaticity0.07
Grand average of hydropathy0.195
Instability index47.45
Isoelectric point5.89
Molecular weight103991.86
Publications
PubMed=22434909

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30782
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     312.34|      86|     213|      56|     146|       1
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   57-  146 (142.15/118.36)	GDPTLqgYLRHAIQHGLISLPIFvsTFLPAARSPE.LHNSATLDMLCRVA.LDCHYATGLPPMGSLVPFSHSPVEILGTVVEAM...ALLRTAYS
  485-  531 (59.48/36.33)	.................................PN.SHDIEALSCVCKLL.YSCEFALEIVSMQTLLP......EL...VAHAI...ALVE.EYD
  546-  630 (110.72/74.82)	GDVVL..FAQSTIARFNLSQPTF..PVKGRSVSPRcLHSAA...LVHRIGeLDNEDTTAFQNW.SRALFDSSIEGIEDTILRSTrpkTLLRIA..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     583.13|     197|     546|     158|     371|       2
---------------------------------------------------------------------------
  158-  371 (290.97/232.74)	SASELL.LLLASCVPDVSPISTGqamvYVADATDLITMFRLMPAVrQVLEN....LMLSLSLLLGEDAKVA.RE....AQMMHTLQLAMGKGDILGSNSDsdivTLSLFLNCLLfgRATEFGPGDT.RHVTAALVGLLR..WSSWTLNVFctqlLLTSLTLIAQSAELGATTKSTgMWRAFTLGRL.PHLLAAFRKAAVSEVITEAESYIAIQSAlSSVIHR.PGLIEK
  709-  920 (292.16/188.51)	SAPNVLrLFYGQKIPQLGPKTTP....FDSSSIQRIALEALGKNV.DVLENngssSIPGVGAIWSDRPREAiREaltaARAGHAPSLDVNRCLLYGTPSD....FLQILWDALM..EAASMGDMEApKRVATFVLTVPRtpRSPPLLPIF....LHTVLLPIVATADHISTTEQT.MTVELLVSIIsSSLTAALHLEWALLTVCEEERFALGQSA.SAMARRlAGDLRK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30782 with Med5 domain of Kingdom Fungi
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