<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30778

Description Uncharacterized protein
SequenceMHENALRELEELMDQILARRSDNVPPIPTSTFRMPSRVTLNDAKRQAWFADLANPDVPLAKLGKNVPHGAKGHDLLDLLHSNRVAIPRAVWFLRVFGSNETAGLRNKPTYIPTQYSIDWANVVTGYLKKQLAEISLPSQPRPGLNIKQTFKGILADPESREKWISRFAYSLNLLRAFYSEGLVDNRTFLSWLVQQMATCNLAQLGFITRLADEYLDGMLVNRALTHSFAEACLIKIKELHASTGKEYLGDVEMTLRSLICRMFLALPDAFVSPRTWQSHANTLEDILFGSVDSEQPNGSAQTTKALREIIESHFSDIRRRNEAMLLQHLPTRVLGSLSSALSDIKLLNSLSGKTDMTTVAFFDDSTESFPRKLDTLLTWSVTPLQYGDHRSYAAASLLRLWRDRMEERAVRRDAPSPDEPIQDHLFDWLDTSDVAADPGNILSVSLLFGKLVKSGLFSYLEYVQRLIARGETGLSVNEEKSSRHQQFLRWIPLHSSHSSLISQRKVVLYGVRARDTPEDLIEREIRRELRALLPEVFGGDPLPIGSLKSTFWAECTNLMSAARFEQVKVMKQWLMPILRKYIASEQSDLPETNTHVLQTYTLATIAFARTKSYGCLLDLTLALLEHTSSNDLLVAVIQALRQHMEVWACMDTMRTIAAALFTTHQAWRSRGLHNRTLMTFLLEVDNERYLDVTARQQVDADLSAYVHALYPMTQHAEAVPQLLPEILLLATDSNPEAPSILANNLWYKYMSVPDWAWKVWDNTVASLRQIPVMIPDVEGRRECALRYAAFLSYIDQHLPHGFDNHILEWFKGSGKNEMAALTDDAWDVASVVLLELCIRGALTVTTILEGLIYPVWNLAANTSSPEHGSSLQVLLASVNNLFDHLLLRDECGMGVPPMNIFDAQGLQTRRRDVFREPHFAPLIGIYPILVLMEHNKNLPDQLRHAALSLRQTMRRVSVFRQGVYRDLDTVRLAFERVLESKSVAEELRDPLIKALRHLLSASGDTSDATDWQAMTTLLSPWNLAATAVSIRLTLKHFSESLSRESTRAAASVTLDKLTVMVFRNCKTPEEADFVAEMVTNVCKAIAAKFLNAGFRRMIEILSDQASQNQPEGITSYMTNGGELLRLLARIVEPFRQDLPLPELDPAVQDEFFSALCTKFVQVMDALAAATDEDASGVDGVHPASHSAIFLARLLQFYLSFPGAWSPQSKAKSEQLCAILTQLILFHGTGSGIDQLAFPLLLDTLYYVLDENPVDPKATNMDLFRNYPEFNLADLPRDMPQPYRAQLRTLLPYVAPNQAVADLAYASRDPISGALVVNMPVQNRPWEWTEFLGEYSPQEVKGDERAADERLTLKNATSLSLELFATRLTTEHVMSAGTHTHEPLVQESVHTFQDGLDSDTVFARDWRETRVVLGESDGAPGRGRGEHDDDAQAGPSTERRTSSRKDSPALSVRTGMQYSGPSSATSLRQSPAHKLSKLSVSTGSEIIDVDSLQTPVAGSSGKRKAAPDDDDEVEIVEGPLPLSRTAKKPKPRATAKPRTKKR
Length1541
PositionKinase
OrganismCeriporiopsis subvermispora (strain B) (White-rot fungus) (Gelatoporia subvermispora)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Polyporales> Gelatoporiaceae> Gelatoporia.
Aromaticity0.08
Grand average of hydropathy-0.225
Instability index45.76
Isoelectric point5.94
Molecular weight172626.75
Publications
PubMed=22434909

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30778
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.37|      16|      42|     907|     922|       1
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  907-  922 (31.47/22.80)	QTRRR.DVFREPHFAPL
  951-  967 (25.90/17.26)	QTMRRvSVFRQGVYRDL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.23|      31|      41|     219|     252|       2
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  219-  252 (46.72/40.03)	LVNR...ALTHSFAEAcliKIKELHASTGKEYL.GDVE
  258-  292 (46.52/30.37)	LICRmflALPDAFVSP...RTWQSHANTLEDILfGSVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.63|      12|      41|      14|      25|       3
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   14-   25 (21.81/12.78)	DQILARRSDNVP
   56-   67 (21.82/12.80)	DVPLAKLGKNVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.66|      13|      41|      98|     110|       4
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   98-  110 (23.33/17.19)	SNETAGLRNKPTY
  138-  150 (24.33/18.32)	SQPRPGLNIKQTF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     170.41|      40|      43|     723|     764|       7
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  723-  764 (67.88/49.48)	LPEILLLATDSNPEAPS....IL..A..NNLWYKY.......MSVPdwAWKVWDNTV
  767-  806 (58.37/34.74)	LRQIPVMIPDVEGRREC....ALryA..AFLSYID.......QHLP....HGFDNHI
  853-  902 (44.15/24.30)	YPVWNLAANTSSPEHGSslqvLL..AsvNNLFDHLllrdecgMGVP..PMNIFD...
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30778 with Med12 domain of Kingdom Fungi
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