<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30750

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMASLAFRPWPRNPPQGGSLKEVLGRVSVERGHFRNITEASLQEEVAAEGALELSESEDDEAVEGQRDAAPSIAKPATREDLYKAKYDMLQHLDAAHNDVMLALDFVSLLLSKDNKQAASTISPALKNEIPVGTLGIDLWQNMPKDRARETQDELLSTKVRMESLQNSANSLLAAANRLEDNVRKETQYWSEVLSIADKGWNVCRLPGQQRRLGVTFGFSESAPDFSRRGVAGLNPGPDGGVALDRGIGVKPKALRVQLRRGGAVVGTSPIPTLAEGGETALEARIRYARDGLFDEELYHEIVRESRSLASLGVNVEGQAVSFKSQPTAEGLVECRFELISLDEADTPPSPDERQTYLAHAISIAARLLLSQAHRDRLQKRQEIPLPLSGNKEERAVLRILRPLMAFMLHDTAIGQVNSLVTCAQSLLTGAKVAHEVERASFQPPTLEDAVTSEALMAALMKPWLSQITLSLRDSEQVVLKLETTLASRFGTLYSLDGPFHKQAYRFDSFLEARQAFDEVLASVLADLLYPALGEGWKCNIREALLTKSTSAEGAEAAIWITVNSETGSLALSSPTKKINWASGDSSNPNQSLLEACKELVG
Length601
PositionHead
OrganismBaudoinia panamericana (strain UAMH 10762) (Angels' share fungus) (Baudoinia compniacensis (strain UAMH 10762))
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Dothideomycetidae> Mycosphaerellales> Teratosphaeriaceae> Baudoinia.
Aromaticity0.05
Grand average of hydropathy-0.279
Instability index43.22
Isoelectric point5.27
Molecular weight65624.47
Publications
PubMed=23236275

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30750
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     214.37|      71|     272|      40|     118|       1
---------------------------------------------------------------------------
   40-  118 (104.31/70.84)	SLQEEVAAEGALE..LSESEDDEAvegqrDAAPSiakPATREDLYKAKYDMLQH..LDAAHNDVMLALDFVSLLLSKDNKQAA
  321-  395 (110.06/59.34)	SFKSQPTAEGLVEcrFELISLDEA.....DTPPS...PDERQTYLAHAISIAARllLSQAHRDRLQKRQEIPLPLSGNKEERA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      87.86|      26|     272|     189|     228|       2
---------------------------------------------------------------------------
  189-  217 (44.75/29.03)	W.SEV.LS..IAD.......KGWNVCRLpgqQRRLGVTFG
  463-  490 (33.40/11.66)	WlSQItLS..LRD.......SEQVVLKL...ETTLASRFG
  516-  540 ( 9.70/ 7.11)	F.DEV.LAsvLADllypalgEGWK.CNI............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.76|      19|     221|      13|      31|       3
---------------------------------------------------------------------------
   13-   31 (35.74/22.79)	P.PQGG.SLKEVLG......RVSVERG
  235-  261 (22.02/11.31)	PgPDGGvALDRGIGvkpkalRVQLRRG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30750 with Med17 domain of Kingdom Fungi
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