<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30728

Description Uncharacterized protein
SequenceMASLTSDLLNYIVFRYLQESGFLHAAFSFGHEARINKSTVDGNRIPFNALVKLVQKGIQYLELETNLSNDDTDMDEDFRFLEPLDLITKNVSELQQMIKEKKEKVQKDKSNADNELDHEREPARDRKKEKNGNAGDLEPMDICIDSTSSPCEISSCDVMALEGHTSEVFVCAWSPEGSLLASGSGDSTARIWTIGDGPGNSTIQRMPPNVKVLKHLESRAAEGNNDVTTLDWNSKGTLLATGSYNGQAKIWNRSGLLLKTLNKHEGTIFSLKWNKKGDYLLSGSTDRTAVVWNVKSGESKQQFNFNSGMLDVDWLDNDSFAVGSTDNKIYVCKVGENQPVKRFSGHKNEINAIKWDPSGSLLASCSEDTTVKIWSMKKDVCLHDFREHSKEINTIKWSPTGAGTSNPNKKLLLASASFDSTVKLWDVEQGRLFHSLNGHREVVYSVAFSPNGDYLASGSLDNCMHIWSVKDAKIVKTYKGYGGIYNVCWNKEGNKVAACFSNKVFVFDIGS
Length511
PositionTail
OrganismSolanum tuberosum (Potato)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum.
Aromaticity0.09
Grand average of hydropathy-0.494
Instability index29.26
Isoelectric point6.00
Molecular weight56819.15
Publications
PubMed=21743474

Function

Annotated function 
GO - Cellular Component
histone deacetylase complex	GO:0000118	IBA:GO_Central

GO - Biological Function
transcription corepressor activity	GO:0003714	IBA:GO_Central

GO - Biological Process
histone deacetylation	GO:0016575	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30728
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     422.32|      39|      39|     321|     359|       1
---------------------------------------------------------------------------
  144-  177 (44.93/24.75)	.IDSTSSP...CEISS...CD.VMALEGH..............TSEVFVCAWSPEG
  181-  236 (42.46/23.01)	ASGSGDSTARIWTIGDgpgNSTIQRMPPNvkvlkhlesraaegNNDVTTLDWNSKG
  237-  255 (27.23/12.30)	TLLATGS..................YNGQ..............AK....I.WNRSG
  256-  277 (31.07/15.00)	LLLKTLNK....................H..............EGTIFSLKWNKKG
  281-  308 (35.32/17.99)	LSGSTDRTAVVWN.........VK..SGE.............sKQQFNF....NSG
  321-  359 (64.37/38.43)	AVGSTDNKIYVCKVGE...NQPVKRFSGH..............KNEINAIKWDPSG
  363-  401 (60.35/35.60)	ASCSEDTTVKIWSMKK...DVCLHDFREH..............SKEINTIKWSPTG
  414-  452 (55.93/32.49)	ASASFDSTVKLWDVEQ...GRLFHSLNGH..............REVVYSVAFSPNG
  456-  493 (60.66/35.82)	ASGSLDNCMHIWSVKD...AKIVKTYKGY..............GG.IYNVCWNKEG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.47|      15|      15|     108|     122|       2
---------------------------------------------------------------------------
  108-  122 (25.93/17.11)	DKSNADNELDHEREP
  125-  139 (25.54/16.74)	DRKKEKNGNAGDLEP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30728 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IKEKKEKVQKDKSNADNELDHEREPARDRKKEKNGNAGDLEPMD
98
141










Molecular Recognition Features






MoRF SequenceStartStop




1) DFRFLE
77
82