<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30728

Description Uncharacterized protein
SequenceMASLTSDLLNYIVFRYLQESGFLHAAFSFGHEARINKSTVDGNRIPFNALVKLVQKGIQYLELETNLSNDDTDMDEDFRFLEPLDLITKNVSELQQMIKEKKEKVQKDKSNADNELDHEREPARDRKKEKNGNAGDLEPMDICIDSTSSPCEISSCDVMALEGHTSEVFVCAWSPEGSLLASGSGDSTARIWTIGDGPGNSTIQRMPPNVKVLKHLESRAAEGNNDVTTLDWNSKGTLLATGSYNGQAKIWNRSGLLLKTLNKHEGTIFSLKWNKKGDYLLSGSTDRTAVVWNVKSGESKQQFNFNSGMLDVDWLDNDSFAVGSTDNKIYVCKVGENQPVKRFSGHKNEINAIKWDPSGSLLASCSEDTTVKIWSMKKDVCLHDFREHSKEINTIKWSPTGAGTSNPNKKLLLASASFDSTVKLWDVEQGRLFHSLNGHREVVYSVAFSPNGDYLASGSLDNCMHIWSVKDAKIVKTYKGYGGIYNVCWNKEGNKVAACFSNKVFVFDIGS
Length511
PositionTail
OrganismSolanum tuberosum (Potato)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum.
Aromaticity0.09
Grand average of hydropathy-0.494
Instability index29.26
Isoelectric point6.00
Molecular weight56819.15
Publications
PubMed=21743474

Function

Annotated function 
GO - Cellular Component
histone deacetylase complex	GO:0000118	IBA:GO_Central

GO - Biological Function
transcription corepressor activity	GO:0003714	IBA:GO_Central

GO - Biological Process
histone deacetylation	GO:0016575	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30728
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     422.32|      39|      39|     321|     359|       1
---------------------------------------------------------------------------
  144-  177 (44.93/24.75)	.IDSTSSP...CEISS...CD.VMALEGH..............TSEVFVCAWSPEG
  181-  236 (42.46/23.01)	ASGSGDSTARIWTIGDgpgNSTIQRMPPNvkvlkhlesraaegNNDVTTLDWNSKG
  237-  255 (27.23/12.30)	TLLATGS..................YNGQ..............AK....I.WNRSG
  256-  277 (31.07/15.00)	LLLKTLNK....................H..............EGTIFSLKWNKKG
  281-  308 (35.32/17.99)	LSGSTDRTAVVWN.........VK..SGE.............sKQQFNF....NSG
  321-  359 (64.37/38.43)	AVGSTDNKIYVCKVGE...NQPVKRFSGH..............KNEINAIKWDPSG
  363-  401 (60.35/35.60)	ASCSEDTTVKIWSMKK...DVCLHDFREH..............SKEINTIKWSPTG
  414-  452 (55.93/32.49)	ASASFDSTVKLWDVEQ...GRLFHSLNGH..............REVVYSVAFSPNG
  456-  493 (60.66/35.82)	ASGSLDNCMHIWSVKD...AKIVKTYKGY..............GG.IYNVCWNKEG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.47|      15|      15|     108|     122|       2
---------------------------------------------------------------------------
  108-  122 (25.93/17.11)	DKSNADNELDHEREP
  125-  139 (25.54/16.74)	DRKKEKNGNAGDLEP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30728 with Med16 domain of Kingdom Viridiplantae
Unable to open file!