<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30722

Description Uncharacterized protein
SequenceMSGELRQWRAYFRSSNLDIFYIIASALRVAAIDHPKEFKLRRDGINELLFSIGGFDSDKAENVVDVEGDKGKRKCKNELVRELNDCDVEKRKSESNVEVEALSDEIEEESRVVNEALSIKKSYVEVEALSDEIEEESRVVNEALSIKKIIDNNQNESDSNIYKSLKRLQMMALSVEILQNTEIGKSVNTLRWHNSKIFDVWSGRWSRSVMMSLPYLYKFSASVLLSNRSIYLVSPLCELNRDFLGWIEMLQEWMDARATLTERKSESTKAFIVDEEDGGLPAPPLEDIPFLFTQTTSIELSQIFDGMDDDGNVIISVGQKDEQEKKQTSLVKPTKPPRGNSGIGRPTKPTLEQKLNNDHEMKLQEKSNKRKIQTRPVPTQQNKLKYPDEDAEHLKFEATKRKLHECYQEVKNAKRQRSVQVMKLKDIPKQGSGIRKPHNRPLVNRNQ
Length447
PositionUnknown
OrganismSolanum tuberosum (Potato)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum.
Aromaticity0.06
Grand average of hydropathy-0.738
Instability index56.68
Isoelectric point6.41
Molecular weight51404.71
Publications
PubMed=21743474

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30722
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     114.47|      26|      26|      95|     120|       1
---------------------------------------------------------------------------
   95-  120 (47.45/31.74)	SNVEVEALSDEIEEESRV...VNEALSIK
  122-  147 (47.82/32.04)	SYVEVEALSDEIEEESRV...VNEALSIK
  166-  188 (19.20/ 8.84)	KRLQMMALSVEILQNTEIgksVN......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     150.07|      40|      44|     327|     370|       2
---------------------------------------------------------------------------
  281-  324 (36.95/24.19)	......PA.PPLEDIPflFTQTTSIELSQifdGMDDDGNviISVGQ.....KDEQE
  327-  370 (59.16/60.03)	QTslvKPTkPPRGNSG..IGRPTKPTLEQ...KLNNDHE..MKLQE.....KSNKR
  373-  415 (53.96/40.81)	QT...RPV.PTQQNK...LKYPDEDAEHL...KFEAT.K..RKLHEcyqevKNAKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.20|      11|     169|      78|      94|       3
---------------------------------------------------------------------------
   62-   76 (15.02/10.96)	NVVDVEgdkgKRKCK
   84-   94 (21.18/ 6.16)	NDCDVE....KRKSE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30722 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IISVGQKDEQEKKQTSLVKPTKPPRGNSGIGRPTKPTLEQKLNNDHEMKLQEKSNKRKIQTRPVPTQQNKLKYPDEDAEHLKFEATKRKLHECYQEVKNAKRQRSVQVMKLKDIPKQGSGIRKPHNRPLVNRNQ
314
447










Molecular Recognition Features






MoRF SequenceStartStop




1) VQVMKLKDIPKQGSGIRKPHNRPLVNRN
419
446