<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30711

Description Uncharacterized protein
SequenceMQLDQLIQDTSLSRETSSRIQPFDLDVLGEVFRLREAAPVDLPPSEKGIPTVAGKSKSESKDKEKKHKKHKDKDKEKDKEHKKHKHRHKDRSKDKDKDKKRDKSVHHDSGADLSKKHHEKKRKHDGEEELNDVHKHKRSKHKSSKIDEIGAIKLL
Length155
PositionHead
OrganismSolanum tuberosum (Potato)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum.
Aromaticity0.01
Grand average of hydropathy-1.712
Instability index48.88
Isoelectric point9.66
Molecular weight18058.18
Publications
PubMed=21743474

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30711
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     123.44|      30|      33|      57|      88|       1
---------------------------------------------------------------------------
   56-   87 (45.09/17.11)	S.KSESKDKEKKhKKHkDKDKEKD..KEHKKHKHR
   88-  109 (36.94/ 8.33)	H.KDRSKDK........DKDKKRD..KS..VHHDS
  110-  142 (41.40/10.19)	GaDLSKKHHEKK.RKH.DGEEELNdvHKHKRSKHK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30711 with Med19 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MQLDQLIQDTSLSRETSSRIQPFDLDVLGEVFRLREAAPVDLPPSEKGIPTVAGKSKSESKDKEKKHKKHKDKDKEKDKEHKKHKHRHKDRSKDKDKDKKRDKSVHHDSGADLSKKHHEKKRKHDGEEELNDVHKHKRSKHKSSKIDEIGAIKLL
1
155










Molecular Recognition Features






MoRF SequenceStartStop




1) IPTVAGKSKSESKDKEKKHKKHKDKDKEKDKEHKKHKHRHKDRSKDKDKDKKRDKSVHHDSGADLSKKHHEKKRKHDGEEELNDVHKHKR
2) KIDEIGAIKLL
3) RIQPFDLDVLGEVFRLRE
49
145
19
138
155
36