<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30693

Description Uncharacterized protein
SequenceMNNQQPPVAKDTEVEKEEESSSVITNSLEPSTKVHEKADIIIEDDDDHPAAIVAMVTEKEVSSVDDDPMDEDTVNPAVVFCIRLKQPRSNLLHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIPERPTECTVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPSQGSANLVRDASCWQRDYEWRQDIAVVTKWLSGVSPYRWLSTRTGGSAKSTFEEKFLSQQPQSPAGWPNFLCVCSVFSSGSVQLHWSQWPPNQNGAPSKWFCTSKGLLGAGPSGIMAADAIITDSGAMHVAGVPIVNPSTVVVWEVAPGPGNGFQATPKTSVSNGVPASLNPPSWDGYSPLAGYLLSSQEYLLQEAKQGKKLTEQHYSDMVTLHCSPVSNFSAYVSPEAAAQSTATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVEDVVLHQIFGNPTSSFGGQAPKQTVWVSKVIKCIPAGNDFKRPQAVGAGPVPFGKNMADSGVEMGKRVSFDPFDLPSDVRTLARIVYSAHGGEIAVAFLRGGVHVFSGPSFTPVDNYHIDVGSAIASPAFSSTSCCSASVWHDTTRDCTILKIIRVLPPAVPSNQVKANSANWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVALNSVIAVLDADFHSLPSTQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALTNPSALVPEPWQASSETLFGIDPEAMAVEPSLVPSIQAYVDAILDLASHFITRLRRYASFCRTLASHAVTAGTGGSRSMVTSPTQSASSPATSQGAQGGTASSAGSTQMQAWVQGAIAKISSTADSVPSSAPNPITGPSTFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLHFCFFFRGTQLPRFIGAAQRNADSSMQKPQPSIPGKAEDSNSGAKPMLGGQVGTGAKGSEEGPSKRSRIGSGNAGQGYTYEEVKVLFLILMDLCRRTAGLVHPLPVSQVGSNNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDSEDMDDNSKLSPSRDLTQHSSLENCDVYYGAHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTSAFASPGGNPSANQHEKEVWWISRWACGCPMCGGTWVRVV
Length1244
PositionTail
OrganismSolanum tuberosum (Potato)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum.
Aromaticity0.08
Grand average of hydropathy-0.187
Instability index47.87
Isoelectric point6.01
Molecular weight134294.16
Publications
PubMed=21743474

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
circadian regulation of gene expression	GO:0032922	IEA:EnsemblPlants
positive regulation of plant-type cell wall cellulose biosynthetic process	GO:2001011	IEA:EnsemblPlants
positive regulation of systemic acquired resistance	GO:1901672	IEA:EnsemblPlants
regulation of cell wall pectin metabolic process	GO:1902066	IEA:EnsemblPlants
regulation of ethylene-activated signaling pathway	GO:0010104	IEA:EnsemblPlants
regulation of jasmonic acid mediated signaling pathway	GO:2000022	IEA:EnsemblPlants
regulation of long-day photoperiodism, flowering	GO:0048586	IEA:EnsemblPlants
regulation of transcription, DNA-templated	GO:0006355	IBA:GO_Central
response to osmotic stress	GO:0006970	IEA:EnsemblPlants
root development	GO:0048364	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30693
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     416.89|     126|     568|     518|     680|       1
---------------------------------------------------------------------------
  410-  485 (65.75/18.71)	................................................................................PVSNFSAYVSPEAAAQSTATTTWGS...................................gvTAVAFDPTRGGSVIAVVIVegqyMSP....YDPDEGPSITGwrvQRWESSVED..................
  518-  680 (195.28/144.61)	PAGNDFKRPQAVGaGPVPFGKNMADSGvemgkrvSFDP.FDLPSDVRTL.ARIVYSAHGgeiavaflrggvhvfsgpsftPVDNYHIDVGSAIASPAFSSTSCCS.....................................ASVWHDTTRDCTILKIIRV....LPP....AVPSNQVKANS...ANWERAIAErfWWsllvgVDWWdAVGC
 1095- 1233 (155.85/71.10)	PPAEEWHRRNMFG.GPWSDSEDMDDNS.......KLSPsRDLTQHSSLEnCDVYYGAHG..............................................lwprkrrmserdaafglntsvglgaylgimgsrrdvvTAVW.KTGLEGVWYKCIRC....LRQtsafASPGGNPSANQ...H..EKEV....WW.....ISRW.ACGC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     279.86|      84|     112|     799|     888|       2
---------------------------------------------------------------------------
  799-  888 (128.26/100.10)	VDAILDlaSHFITRLRRYASFCRTLASHAVTAGTGGSRSMVTSPTQSaSSPATSQGAQGgtaSSAGSTQMQAWVQGAIAKISSTADSVPS
  916-  999 (151.60/99.38)	VRLIGD..CHFLHRLCQLLHFCFFFRGTQLPRFIGAAQRNADSSMQK.PQPSIPGKAED...SNSGAKPMLGGQVGTGAKGSEEGPSKRS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     154.99|      46|     229|      89|     136|       3
---------------------------------------------------------------------------
   89-  136 (79.12/46.24)	SNLLHKMSVPeLCRNFSAVAWC...GKLNAIACASETCAR..IPSSnANPPFW
  318-  368 (75.87/37.13)	SGAMHVAGVP.IVNPSTVVVWEvapGPGNGFQATPKTSVSngVPAS.LNPPSW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30693 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAQRNADSSMQKPQPSIPGKAEDSNSGAKPMLGGQVGTGAKGSEEGPSKRSRIGSGN
2) GTGGSRSMVTSPTQSASSPATSQGAQGGTASSAG
949
831
1005
864










Molecular Recognition Features






MoRF SequenceStartStop




NANANA