<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30692

Description Uncharacterized protein
SequenceMVTEKEVSSVDDDPMDEDTVNPAVVFCIRLKQPRSNLLHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIPERPTECTVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPSQGSANLVRDASCWQRDYEWRQDIAVVTKWLSGVSPYRWLSTRTGGSAKSTFEEKFLSQQPQSPGSVLFSSSKQLKNSLVNFTVILTAAGWPNFLCVCSVFSSGSVQLHWSQWPPNQNGAPSKWFCTSKGLLGAGPSGIMAADAIITDSGAMHVAGVPIVNPSTVVVWEVAPGPGNGFQATPKTSVSNGVPASLNPPSWDGYSPLAGYLLSSQEYLLQEAKQGKKLTEQHYSDMVTLHCSPVSNFSAYVSPEAAAQSTATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVEDVVLHQIFGNPTSSFGGQAPKQTVWVSKVIKCIPAGNDFKRPQAVGAGPVPFGKNMADSGVEMGKRVSFDPFDLPSDVRTLARIVYSAHGGEIAVAFLRGGVHVFSGPSFTPVDNYHIDVGSAIASPAFSSTSCCSASVWHDTTRDCTILKIIRVLPPAVPSNQVKANSANWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVALNSVIAVLDADFHSLPSTQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALTNPSALVPEPWQASSETLFGIDPEAMAVEPSLVPSIQAYVDAILDLASHFITRLRRYASFCRTLASHAVTAGTGGSRSMVTSPTQSASSPATSQGAQGGTASSAGSTQMQAWVQGAIAKISSTADSVPSSAPNPITGPSTFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLHFCFFFRGTQLPRFIGAAQRNADSSMQKPQPSIPGKAEDSNSGAKPMLGGQVGTGAKGSEEGPSKRSRIGSGNAGQGYTYEEVKVLFLILMDLCRRTAGLVHPLPVSQVGSNNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDSEDMDDNSKLSPSRDLTQHSSLENCDVYYGAHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTSAFASPGGNPSANQHEKEVWWISRWACGCPMCGGTWVRVV
Length1214
PositionTail
OrganismSolanum tuberosum (Potato)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum.
Aromaticity0.08
Grand average of hydropathy-0.144
Instability index46.87
Isoelectric point6.72
Molecular weight130932.78
Publications
PubMed=21743474

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30692
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     461.65|     149|     438|     270|     520|       1
---------------------------------------------------------------------------
  169-  332 (238.66/251.97)	WLSGVSPYRWLSTRtGGS..AKSTFEEKFLSQQPQSPGSVLFSSSKQLKNSLVNFTVILTAAGWPNflcvcSVF..............................SSGSVqlhwsqwPPNQNGAPSKWFCTSKgLLGA..GPSGIMAADAII..TDSGAMHVA....GVPIVN.PSTVVVWEVAPGPGNGFqATPKTSVSNGVPAS
  402-  592 (222.99/183.51)	WGSGVTAVAFDPTR.GGSviAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVEDVVLHQIFGNPT.....SSFggqapkqtvwvskvikcipagndfkrpqavGAGPV.......PFGKNMADSGVEMGKRvSFDPfdLPSDVRTLARIVysAHGGEIAVAflrgGVHVFSgPSFTPVDNYHIDVGSAI.ASPAFSSTSCCSAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     279.86|      84|     112|     769|     858|       2
---------------------------------------------------------------------------
  769-  858 (128.26/77.90)	VDAILDlaSHFITRLRRYASFCRTLASHAVTAGTGGSRSMVTSPTQSaSSPATSQGAQGgtaSSAGSTQMQAWVQGAIAKISSTADSVPS
  886-  969 (151.60/77.34)	VRLIGD..CHFLHRLCQLLHFCFFFRGTQLPRFIGAAQRNADSSMQK.PQPSIPGKAED...SNSGAKPMLGGQVGTGAKGSEEGPSKRS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     136.42|      41|     558|     593|     650|       3
---------------------------------------------------------------------------
  593-  650 (53.99/68.47)	VWHdTTRDCTILKIIRVL........PPAVPSnqvkANSAnwERAIaerfWWsllvgVDWWdAVGC
 1155- 1203 (82.43/45.97)	VWK.TGLEGVWYKCIRCLrqtsafasPGGNPS....ANQH..EKEV....WW.....ISRW.ACGC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     124.18|      37|     729|     333|     371|       4
---------------------------------------------------------------------------
  333-  371 (59.90/39.85)	LNPPS..WDGYSPLAGYlLSSQEYLLQEAK..QGKKLTeQHYS
 1063- 1103 (64.29/34.92)	LHPPAeeWHRRNMFGGP.WSDSEDMDDNSKlsPSRDLT.QHSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.98|      19|     787|      75|      93|       5
---------------------------------------------------------------------------
   75-   93 (40.16/23.74)	SNANP...P.FWIPIHI...VIPERP
  859-  884 (24.82/11.66)	SAPNPitgPsTFMPISIntgTFPGTP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30692 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAQRNADSSMQKPQPSIPGKAEDSNSGAKPMLGGQVGTGAKGSEEGPSKRSRIGSGN
2) GTGGSRSMVTSPTQSASSPATSQGAQGGTASSAG
919
801
975
834










Molecular Recognition Features






MoRF SequenceStartStop




NANANA