<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30682

Description Uncharacterized protein
SequenceMEEKDGVVIKVEGLSALPLLNSSTIAVAINGKKMSKYVVKWALDKFVPEGKVCFKLLHVRPRIVGVPTPMGSFIPIAQVREDVVAAFRKDVEWQTSEKLLPYKMLCTNRKVQVEVLQLESDDIVNAIAQEITKLNIIKLVIGASSRSIFSRGQSLSSRISDSTPSFCTIYAVSKGKLLSVRPSNSEINGSSSAGDSYTSCSITSSTVHTSSSLTERSEPDSSSSYSHFRSPSLPMQRFRALSHINQNFPHRRACSNVSVHHNSLSLDFGDGEDDVRSCPQGTYLTDGDDLTSSFRSLVTDNYTTADDQASISGALTDSSSRYETDINFELEKLRTELRHTRGMYAVAQTEVIDASRKINELHKRRLEEDVKLREICLKEEEVKELARKENEKYEAAKREADYVKECAEREAAQRKEAELLALREAKEKDKLENALTGQAHQYQEFTWEEIVSSTSSFDENLKIGMGGYGTVYKCSLHHTTVAVKVLHSEGSHLTKQYQQELEILSKISHPHLLILLGVCPDRGCLVYEFMENGSLEERLFRKHDTPPIPWFDRYRIAWEVASALAFLHNSKPNPVIHRDLKPANILLDRNFVSKIGDVGLSTMINLDAALSTIYKDTGPVGTLCYIDPEYQRTGLISPTSDIYAFGMVLLQLLTAKAAMGLPHIVETAIDKDNLTKVLDPEAGKWPIEETKKLAMLALKCTELYRRDRPDLKDEILPALEKLKEFADKTRDSASTTKSPPPNYFLCPLLKDIMKDPCVAADGFTYDRNAIETWLKEKDISPMTSLPLAHKNLLPNYALLSAILDWKSR
Length808
PositionTail
OrganismSolanum tuberosum (Potato)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum.
Aromaticity0.07
Grand average of hydropathy-0.362
Instability index42.11
Isoelectric point6.21
Molecular weight90579.18
Publications
PubMed=21743474

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30682
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      98.78|      28|      29|     373|     401|       1
---------------------------------------------------------------------------
  350-  370 (24.26/14.45)	........EVIDASRKINE..LHKRRLEEDV
  373-  401 (41.40/36.72)	REiCLKEEEVKELARKENE..KYEAAKREAD
  404-  429 (33.12/23.19)	KE.CAEREAAQ...RKEAEllALREAK.EKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     121.29|      39|     325|     231|     270|       2
---------------------------------------------------------------------------
  231-  270 (69.90/49.05)	PSLP.MQRFR.......ALSHINQNFP....HRR.ACSNVSVHHNSLSlDFGD
  546-  597 (51.39/30.99)	PPIPwFDRYRiawevasALAFLHNSKPnpviHRDlKPANILLDRNFVS.KIGD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.73|      14|      30|     185|     199|       3
---------------------------------------------------------------------------
  185-  199 (19.36/14.27)	SEINgSSSAGDSYTS
  217-  230 (24.37/13.27)	SEPD.SSSSYSHFRS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      63.65|      14|      30|     273|     286|       5
---------------------------------------------------------------------------
  273-  286 (27.79/18.96)	D...DVRSCPQGTYLTD
  289-  304 (16.36/ 8.09)	DltsSFRSLVTDNY.TT
  306-  317 (19.50/11.08)	D...D.QASISGA.LTD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.89|      18|      32|     473|     490|       8
---------------------------------------------------------------------------
  473-  490 (31.14/22.15)	KCSLHHTTVAVKVLHSEG
  506-  523 (32.75/23.67)	KISHPHLLILLGVCPDRG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30682 with Med32 domain of Kingdom Viridiplantae
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