<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30674

Description Uncharacterized protein
SequenceMSGEDMIKAEGICDVEDTVFVAVGKNVKEGKSVLSWALKSFAGRRICVLHVHQPNHLFSSKDGKLSGAKLKQHMVKACQELDRLRLHKLLNQYLLFITQAGIQGGKVWLEINNVERGIIHIIEEHKIRWLVMGAAAETHYSKQLSELKSSKAKFVCQHAPMHCQIWFTCNECLIQTRSMNNSLSSSLESLSSPEDNGGTKMRNHVGDGYEDLNILENASSPANKIVKVEIKGDYSPVHEAHLHCATSQPLLEEGSFHGKASSDERSRVEHAMMDAENSKQRAFEESVKRWRAEEDAMEAIRMAEVSYRLFKEKEDQRKEKEENFAKQKEGIEELKIQHDLCLNELQMIQEKKPVLESQITESSYAGKELEEKIIQAVELLISFRKQRDEMQIERDNAIKEVNRFRKLVQDDADEYCIKNFFSISFSDIIEATRNFDPSSKIGEGKFGSVYKGIIHHVKVAIKMLPACGSFSDSDFQHKAESLSRVRHPNLVTLIGICSESRSLAYEFLENGNLEDHLACCKKSRPLHWQHRIRIAVEICSALIFVHANDPCIVHGNLRPTNILLDAKFVSKISDFGVHLLISQTENSNNDDPEASIYVDPEYIDNGQFTVESDVYSFGVILLRLLTARPALGIVRDVKCALESGNLGSVLDSSAGDWPIEQAELLAYLALSCCEKDPLNRPNMLSEVWPTIEPMRDICKPHSDLNTSSQGSKGQKRIPPHFVCPIFQDVMEDPHIAADGYTYEGDAIKGWLYSGHDTSPMTNLKLDTCDLIPNYALYRAIQEWQQQF
Length787
PositionTail
OrganismSolanum tuberosum (Potato)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum.
Aromaticity0.07
Grand average of hydropathy-0.404
Instability index43.00
Isoelectric point5.78
Molecular weight88989.20
Publications
PubMed=21743474

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
plasma membrane	GO:0005886	IEA:EnsemblPlants

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30674
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.41|      18|      22|     489|     506|       1
---------------------------------------------------------------------------
  489-  506 (30.42/15.75)	NLVTLIGICSESRSLAYE
  512-  529 (35.98/19.77)	NLEDHLACCKKSRPLHWQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.48|      47|     160|     424|     485|       2
---------------------------------------------------------------------------
  424-  473 (72.74/63.28)	SFSDIIEATRNFDPsSKIGEGKFgSVYK...................GIIHHVKVAIKMlPACGSFSDS
  587-  652 (72.75/33.10)	SNNDDPEASIYVDP.EYIDNGQF.TVESdvysfgvillrlltarpalGIVRDVKCALES.GNLGSVLDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.47|      23|      25|     265|     289|       4
---------------------------------------------------------------------------
  235-  257 (40.11/20.22)	SPVHEAHLHCATS.QPLLEEGSFH
  266-  289 (35.37/25.86)	SRVEHAMMDAENSkQRAFEESVKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.97|      23|      30|     347|     370|       6
---------------------------------------------------------------------------
  347-  370 (34.04/31.98)	MIQEKKPVLESQItESSYAGKELE
  380-  402 (38.93/30.77)	LISFRKQRDEMQI.ERDNAIKEVN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30674 with Med32 domain of Kingdom Viridiplantae
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