<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30671

Description Uncharacterized protein
SequenceMKASCSNNWCPKVILKFKTGILYVSFLVYHTHFTVFSSTCLQEHAVLFITRLLSPCVPSDYSGTDSHLISYAPFLNVLVVGITSVDCIQIFSLHGLVPQLVGALMPICEAFGSCPPNVSWTLMSEEITSHAVFSNAFTLLLTLWRFDQPPLEHVTRDVPVGSHLTPEYLLLVRNSQLAFSEDLLIDQSKSKQLSRVVSQLPREPIFMDSFPKLKCWYRQHQACIASPLSGLVPGTPVHQIVEALLDFMFRKINSAGQSLIPPTSSGSNSSGSGNEEISPHLKLPAWDILEAVPFVLNAALTACAHGTLSPRELATGLKHLADFLPASLATITSYFSAEVTRGIWKPASMNGTDWPSPAANLAAVEQQVKKILADTGVDVPSLSVGGSSPAILPLPLAVLVSLTITYKLDRDTDRFLNLMGAAVSNLATSCPWPCMPVMAALWAQKVRRWSDFLVFSASRTVFHHSSDAVVQLLRVCFTATLGIGTSSIESNGGVGSLLGHGFGSHFSGGISAVAPGILYLRVHRAVRNVMFMSEEIVSLLMHFVRDIADSGVPAKDLEKLKKTRGEIRSLSSQKTDSGFPASCHVSLAAAMVRVKLAASLGASLVWITGGLSLVQSLLKETLPSWFISAHRSEPNGGVSEGMVARLRGYALAYLAVLCGTFCWGVDSSSPTSKWRPSMLGAHLEFLASALDGKISLGCNKATWRAYVSGFISLIVGCTPSWLLEVDLQVLKRLSKGLKRCDEEVLALALLEASGVGAMGTAAEMIIEGSLNFAR
Length774
PositionTail
OrganismSolanum tuberosum (Potato)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum.
Aromaticity0.08
Grand average of hydropathy0.311
Instability index44.07
Isoelectric point8.03
Molecular weight83397.83
Publications
PubMed=21743474

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30671
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.40|      37|      75|     132|     170|       1
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  132-  170 (62.95/44.16)	VFSNAFTLLLTLWRFDQ....PPLEHVTRDVPVgsHLTPEYLL
  205-  245 (64.45/39.02)	IFMDSFPKLKCWYRQHQaciaSPLSGLVPGTPV..HQIVEALL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     158.91|      49|      75|     354|     404|       2
---------------------------------------------------------------------------
  354-  404 (72.76/51.99)	WPSPAANLAAVEQQVKKiLADTGVDVPSLSV.GGSSPAILPLpLAVLVSLTI
  432-  481 (86.15/52.22)	WPCMPVMAALWAQKVRR.WSDFLVFSASRTVfHHSSDAVVQL.LRVCFTATL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     239.89|      83|     175|     502|     592|       3
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  502-  592 (113.82/110.23)	FGSHFSGGISAVaPGILYLRVHRAV.RNVM..FMSeEIVSLLMHFVRDIaDSGVpAKDLEK.LKKTRGEIRSLSSQKTdSGFPAschVSLAAAMV
  679-  765 (126.07/86.52)	LGAHLEFLASAL.DGKISLGCNKATwRAYVsgFIS.LIVGCTPSWLLEV.DLQV.LKRLSKgLKRCDEEVLALALLEA.SGVGA...MGTAAEMI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30671 with Med33 domain of Kingdom Viridiplantae
Unable to open file!