<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30665

Description Uncharacterized protein
SequenceMKVDGDGPPSAAAAMVNVAVAVKSAEGRGSQRAVRWAIEKLLPKAHRFFLIHVMPTVTAIPTPSGENIPVNELDDNVVEMYIEDMRANCEEMFIPFKTLCKRKSVETVVLEGDNPATVLLKYVAQAGINSLVLGSSSPSYFGRKQKDGDVPSAILKHAPESFDVYVVLSNGLVKNSLNPLLSTETELHTINQQESIVSCASMDFHSRASSLADFTHLNPPAFLHGNTSNHISPQQRYIQNLEESAAGLEAVKSSHFSTYSEHLDIQVEMGRLHLELRNTITLYNQTCEHLIHAQNKVQLLSLKCCEETRRVNAAKKREESLRKTAAELKKKHVEIEKEVEIARKLLAEEACERQIAELKALQQSLEKQKVVDALLSCDGRYRRLTREEIQVATDSFSESKIIGEGGYGKVYKGNLDHTPVAIKVLHPNASLKKEEFLKEVEVLSQLHHPHIVLLLGASPGNGCLVYEYMENGSLEDHIFPGKNRPLPWFVRFRILFEVACALAFLHNSNPDPIVHRDLKPGNILLDKNYVSKIGDVGLAKIMSDIVPESITEYRNSILAGTFAYMDPEYLRTGTLRPKSDLYAFGIITLQILAACHPNGLIMKFEEAIDTNSLADVLDKSVVDWPLIEAEELSKMALQCCKLRCRDRPDLETEVLPLLKKLFEFAEMHVRVQGNLRTPSQYFCPILQEVMEEPHIAADGFTYEHRAIKAWVDRHNVSPVTKHILQHKMLTPNHTLHLAIQDWRSR
Length745
PositionTail
OrganismSolanum tuberosum (Potato)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum.
Aromaticity0.06
Grand average of hydropathy-0.240
Instability index48.01
Isoelectric point6.29
Molecular weight83677.18
Publications
PubMed=21743474

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30665
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     116.07|      38|      43|     177|     218|       1
---------------------------------------------------------------------------
  180-  218 (59.67/47.85)	LLSTETELHTINQQESI....VSCASMDfHSRASSLADFT.HLN
  222-  264 (56.41/31.72)	FLHGNTSNHISPQQRYIqnleESAAGLE.AVKSSHFSTYSeHLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.81|      26|      43|     298|     323|       2
---------------------------------------------------------------------------
  298-  323 (42.17/25.59)	QLLSLKCCEETRRVNAAKKREESLRK
  326-  344 (19.75/ 8.56)	AELKKKHVEIEKEVEIARK.......
  346-  367 (27.90/14.75)	..LAEEACE..RQIAELKALQQSLEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.59|      30|      43|     101|     131|       3
---------------------------------------------------------------------------
  101-  131 (43.13/37.20)	KRKSVETVVLEgDNPATVLLKYVAQAGI..NSL
  146-  177 (45.46/33.32)	KDGDVPSAILK.HAPESFDVYVVLSNGLvkNSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.85|      40|     298|     387|     431|       4
---------------------------------------------------------------------------
  387-  431 (64.61/56.72)	EEIQVATDSFS.ESKII....GEGGYGKVYKGNLDHtpvaiKVLHPNASL
  691-  735 (64.23/44.32)	EEPHIAADGFTyEHRAIkawvDRHNVSPVTKHILQH.....KMLTPNHTL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.88|      29|     538|      41|      75|       5
---------------------------------------------------------------------------
   41-   70 (47.77/43.57)	LLPKAHRFFLIHVMpTVTAIPTPSGENIPV
  657-  685 (53.11/30.23)	LLKKLFEFAEMHVR.VQGNLRTPSQYFCPI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30665 with Med32 domain of Kingdom Viridiplantae
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