<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30642

Description Uncharacterized protein
SequenceMTICEVFGSCAPNISWTLTTGEDISVHAVFSNAFALLLKLWRFNHPPIEYRVGDVPPVGCQLTPEYLLLVRNSHLVSSGNMLKDPNRRRLATVASSSSPNPIFVDSFPKLRVWYRQHLACIASTLCGLVNGTLVCQTVDVLLNMMFKKISGGSQSLISITSGSSSSSGTGSEDTSLRPKLPAWDILEAVPFVVDAALTACAHGRLSPRELCTGLKDLADFLPASLATIVSYFSAEVTRGVWKPVFMNGTDWPSPAANLSNVEEQIKKILAATGVDVPSLAAGGSSPAILPLPLAAFVSLTITYKLDKASQRFLNLAGPALESLAAGCPWPCMPIVASLWTQKAKRWSDFLVFSASRTVFLNNNHAVIQLLKSCFNATLGLNSSSISSNGGIGALLGHGFGSHFYGGISPVAPGILYLRVYRSIRDIMFLREEIVSLLMQSISDIARNELPRQRLNKLKIPKNGKKFGNVSLAATMTRVKLAALLGASLLWLSGGSGLVQSLIKETLPSWFLSVNSSNQEGDKGDLVPMLKGYALAYFAVLCGAFASGVDSLSMASKRRPKIIGRHVEFIASVLDGKISLGCDPSTWHAYVSGFVSLMVGCTPTWVYEVDAELLKKLSKGLRQWHEQDLALALLSIGGVGTMGSAAELIMEASS
Length653
PositionTail
OrganismSolanum tuberosum (Potato)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum.
Aromaticity0.08
Grand average of hydropathy0.262
Instability index39.45
Isoelectric point9.01
Molecular weight70055.55
Publications
PubMed=21743474

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30642
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     222.22|      51|      71|     178|     230|       1
---------------------------------------------------------------------------
  108-  161 (68.01/39.58)	PKLRVW.YRQHLACI...ASTLC..GLVNGTLVCQTVDVLLNMMfkkisggSQSLISITS
  178-  230 (82.74/55.84)	PKLPAWDILEAVPFVVDAALTACahGRLSPRELCTGLKDLADFL.......PASLATIVS
  252-  298 (71.47/41.97)	PS.PAAN.LSNVEEQIKKILAAT..GVDVP.SLAAGGSSPA.IL.......PLPLAAFVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.35|      32|     536|       3|      91|       2
---------------------------------------------------------------------------
   58-   91 (51.39/117.43)	VGCqlTPEYLLLVRNSHLVSSGNMLKDPNRRRLA
  598-  629 (57.96/15.95)	VGC..TPTWVYEVDAELLKKLSKGLRQWHEQDLA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30642 with Med33 domain of Kingdom Viridiplantae
Unable to open file!