<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30641

Description Uncharacterized protein
SequenceMAVKGAEDEKIAAATILCGASLIRGWNIQEHTVNFITRLLSPPVPTDYSGKDSHLIGYAPMLNVLLVGIAPVDCVQIFSLHGMVPQLAASSMTICEVFGSCAPNISWTLTTGEDISVHAVFSNAFALLLKLWRFNHPPIEYRVGDVPPVGCQLTPEYLLLVRNSHLVSSGNMLKDPNRRRLATVASSSSPNPIFVDSFPKLRVWYRQHLACIASTLCGLVNGTLVCQTVDVLLNMMFKKISGGSQSLISITSGSSSSSGTGSEDTSLRPKLPAWDILEAVPFVVDAALTACAHGRLSPRELCTGLKDLADFLPASLATIVSYFSAEVTRGVWKPVFMNGTDWPSPAANLSNVEEQIKKILAATGVDVPSLAAGGSSPAILPLPLAAFVSLTITYKLDKASQRFLNLAGPALESLAAGCPWPCMPIVASLWTQKAKRWSDFLVFSASRTVFLNNNHAVIQLLKSCFNATLGLNSSSISSNGGIGALLGHGFGSHFYGGISPVAPGILYLRVYRSIRDIMFLREEIVSLLMQSISDIARNELPRQRLNKLKIPKNGKKFGNVSLAATMTRVKLAALLGASLLWLSGGSGLVQSLIKETLPSWFLSVNSSNQEGDKGDLVPMLKGYALAYFAVLCGAFASGVDSLSMASKRRPKIIGRHVEFIASVLDGKISLGCDPSTWHAYVSGFVSLMVGCTPTWVYEVDAELLKKLSKGLRQWHEQDLALALLSIGGVGTMGSAAELIMEASS
Length744
PositionTail
OrganismSolanum tuberosum (Potato)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum.
Aromaticity0.08
Grand average of hydropathy0.286
Instability index39.20
Isoelectric point8.80
Molecular weight79681.69
Publications
PubMed=21743474

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30641
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     222.22|      51|      71|     269|     321|       1
---------------------------------------------------------------------------
  199-  252 (68.01/40.15)	PKLRVW.YRQHLACI...ASTLC..GLVNGTLVCQTVDVLLNMMfkkisggSQSLISITS
  269-  321 (82.74/56.61)	PKLPAWDILEAVPFVVDAALTACahGRLSPRELCTGLKDLADFL.......PASLATIVS
  343-  389 (71.47/42.57)	PS.PAAN.LSNVEEQIKKILAAT..GVDVP.SLAAGGSSPA.IL.......PLPLAAFVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     133.45|      40|     537|      83|     182|       2
---------------------------------------------------------------------------
   22-   63 (69.04/86.47)	LIRGWNIQEHTVNFitRLLS.PPVPTDYSG......KDSHLIGYAPMLN
  128-  174 (64.41/48.43)	LLKLWRFNHPPIEY..RVGDvPPVGCQLTPeylllvRNSHLVSSGNMLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.56|      26|     272|     413|     439|       3
---------------------------------------------------------------------------
  413-  439 (48.49/30.14)	SLAAGC.P.WpCMPIVASLWTQKAK...RWSD
  686-  716 (36.08/17.40)	SLMVGCtPtW.VYEVDAELLKKLSKglrQWHE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30641 with Med33 domain of Kingdom Viridiplantae
Unable to open file!