<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30638

Description Uncharacterized protein
SequenceMDLDEFRLILSESKVDVWTMIDAAISVAAVDCADEMKRRRDGIVEKLYSTRSRSSDDVGNGQHRLDNGTRNVEMMMNKSPLTPESNQREKENSNEKNEEEEDADPYGGLFDDDDEQTQILTIKQQLENPQLSDEDVVDLLQTLADMDITFQALQDTDIGRHVNQLRKHPSSEVRRLVKMLVRKWKGTVDDWVRLNPPEQHESANLIAADDDSPQQSVRRNQQNGNHQVPDFAYSPNPRNGSSSSDRNNSESEYKPKPVPQRNVTPTRPLQSAPKPASAPPPSV
Length283
PositionUnknown
OrganismSolanum tuberosum (Potato)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum.
Aromaticity0.04
Grand average of hydropathy-1.054
Instability index58.50
Isoelectric point4.79
Molecular weight32028.82
Publications
PubMed=21743474

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30638
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.71|      21|      95|     112|     133|       2
---------------------------------------------------------------------------
  112-  133 (31.94/19.54)	DDDEQtQILTIKQQLENPQLSD
  210-  230 (37.78/19.37)	DDSPQ.QSVRRNQQNGNHQVPD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.97|      14|      18|     250|     263|       3
---------------------------------------------------------------------------
  250-  263 (25.32/11.52)	ESEYKPKPVPQRNV
  270-  283 (24.66/11.06)	QSAPKPASAPPPSV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30638 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IVEKLYSTRSRSSDDVGNGQHRLDNGTRNVEMMMNKSPLTPESNQREKENSNEKNEEEEDADPYGGLFDDDDE
2) VDDWVRLNPPEQHESANLIAADDDSPQQSVRRNQQNGNHQVPDFAYSPNPRNGSSSSDRNNSESEYKPKPVPQRNVTPTRPLQSAPKPASAPPPSV
43
188
115
283










Molecular Recognition Features






MoRF SequenceStartStop




1) ILTIKQQLE
2) RLVKMLVRKWKGTVDDW
3) RNVTPTRPLQSAPK
119
175
261
127
191
274