<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30636

Description Uncharacterized protein
SequenceMASTPMMPPNADGSAPAAPPLPGTDMTSICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRARAIHPLDFSHISKMTGMEYTLSEVMEPNLFVIRKQKRDSPEKVTPMLTYYILDGSIYQAPQLCNVFAARLGRALYHISKAFGTASSKLEKIGYVESENDSQASETKPAKEAIDFKELKRVDHILASLQRKLPPVPPPPPFPEGYAPPSTSEPSENQQPETQPPPIDPIIDQGPSKRMKV
Length247
PositionHead
OrganismSolanum tuberosum (Potato)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum.
Aromaticity0.09
Grand average of hydropathy-0.502
Instability index64.47
Isoelectric point5.63
Molecular weight27683.29
Publications
PubMed=21743474

Function

Annotated function 
GO - Cellular Component
core mediator complex	GO:0070847	IBA:GO_Central
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coactivator activity	GO:0003713	IBA:GO_Central

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30636
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.04|      17|      24|     200|     216|       1
---------------------------------------------------------------------------
  200-  216 (38.15/15.72)	PPVPPPPPFPEGYAPPS
  226-  242 (34.89/13.82)	PETQPPPIDPIIDQGPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.38|      20|      30|      22|      43|       2
---------------------------------------------------------------------------
   22-   43 (37.07/28.59)	PGTDMTsiCFRDQLWLNT.YPLD
   55-   75 (37.32/22.62)	PFYDWT..CNNEQLRARAiHPLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.61|      18|     106|       4|      21|       3
---------------------------------------------------------------------------
    4-   21 (37.19/22.57)	TPMMPPNA.DGSAPAAPPL
  112-  130 (31.42/17.94)	TPMLTYYIlDGSIYQAPQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.06|      25|      64|      78|     107|       4
---------------------------------------------------------------------------
   78-  107 (34.87/34.67)	HISKMTGmeyTLSEVMEPNLFVirKQKRDS
  144-  168 (43.18/26.15)	HISKAFG...TASSKLEKIGYV..ESENDS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30636 with Med6 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ASLQRKLPPVPPPPPFPEGYAPPSTSEPSENQQPETQPPPIDPIIDQGPSKRMKV
193
247










Molecular Recognition Features






MoRF SequenceStartStop




1) FKELKRVDHILASLQRKLPP
2) PIDPIIDQGPSKRMKV
182
232
201
247