<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30634

Description Uncharacterized protein
SequenceMSEEISSHAIFSNAFTLLLKLWRFDQPPLEHRMDAVPVGAHLTPEYLLLVRNSQLTSSDDLQKDQSKIKRLTRLSSPLSGEPIFLDSFPKLTLWYRQHQACIASPLSGLVPGTPVHQIVEALLNFMFRKINRTGQSLTPVISGSSSSSGPGNEDVSLHLKLPAWDILEAVPFVLDAALTGCAHGRLSPRELATGLKDLADFLPASLATIVSYFSAEVTRGIWMLASMNGTDWPSPAANLAAVEQQIKKILAATGVNVPSLTVGGNSPATLPLPLAALVSLTITYKLDRSTDRFLNLMGPALSNLATGCPWPCMPVMVALWAQKVKRWSDFLVFSASRTVFHHNRDAVVQLLRMCFAATLGQTTSSIASNGGVGALLGHGYGSHFSGGISPVAPGLLYLRVHRAVPNVMFMTEEVVSLLMHSVRDIASSLVPSEKLKKSKYVRKYGQVSLAGALTRVKLVATLGASLVWITGGVVLVQSLIKETLPSWFISSHGMDPSGGMSEGLVSTLRGKALACFAVISGTFAWGVDSSSPAAKRRSSILEAHLEFVAGALHGKISLGCNKATWKSYVSGLISLIVGCTPNWLLEVDVEVLKSLSTGLKQWDEEELALALLNSSGIGAMGATAEMIIEGGMNFVR
Length636
PositionTail
OrganismSolanum tuberosum (Potato)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum.
Aromaticity0.07
Grand average of hydropathy0.253
Instability index42.67
Isoelectric point8.88
Molecular weight68159.34
Publications
PubMed=21743474

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30634
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.76|      21|     156|     430|     477|       1
---------------------------------------------------------------------------
  350-  372 (33.09/ 6.15)	LLRMCFAATLGqtTSSIASNGGV
  453-  473 (36.67/12.32)	LTRVKLVATLG..ASLVWITGGV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     225.80|      63|      77|     184|     248|       2
---------------------------------------------------------------------------
  136-  176 (29.95/ 9.99)	.....................SLTPVISG............SS...........SSSGPGNEDvslhlklPAWDiLEAVPFVLDA
  184-  248 (99.21/57.16)	GRLSPrELATGLKDLADfLPASLATIVSY............FSAEVTRGIWMLASMNGTDWPS.......PAAN.LAAVEQQIKK
  254-  326 (96.64/48.30)	GVNVP.SLTVGGNSPAT.LPLPLAALVSLtitykldrstdrFLNLMGPALSNLAT..GCPWPC.......MPVM.VALWAQKVKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     120.14|      37|      71|       1|      39|       3
---------------------------------------------------------------------------
    1-   39 (59.89/46.12)	MSEEISSHAIFSNAFTlLLKLW.RFDQPPLEHRMDA.VPvG
   74-  112 (60.24/37.58)	LSSPLSGEPIFLDSFP.KLTLWyRQHQACIASPLSGlVP.G
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.34|      26|     536|      43|      68|       6
---------------------------------------------------------------------------
   43-   68 (44.39/31.46)	TPEYLLLVRNSQLTS.SDDL.QKDQSKI
  580-  607 (37.95/25.82)	TPNWLLEVDVEVLKSlSTGLkQWDEEEL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30634 with Med33 domain of Kingdom Viridiplantae
Unable to open file!