<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30630

Description Uncharacterized protein
SequenceMFSSLKNADGQRHCILVAASNPYPLPRRVYYPAMLNLEQSDNEAHTSLRLADAETVARAFPQCSVSLSVICPRKLPKLRAIYNAGKCDRQAAAPPVDTSKNPNFLVLISENFSEACAAFSHTEMESLAPNQTLVEMDMSSVPPVSGPAATSNPSVMNQQPISAGTIPLGRNNSAEANMSLSQQQTLATVPSAPSGYVEFWEVRPTNK
Length207
PositionUnknown
OrganismSolanum tuberosum (Potato)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum.
Aromaticity0.06
Grand average of hydropathy-0.266
Instability index48.94
Isoelectric point6.29
Molecular weight22336.05
Publications
PubMed=21743474

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30630
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     123.91|      41|      50|      94|     142|       1
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   94-  142 (57.71/58.07)	PPVDTSkNPNflVLISENFSEACAAFSHTEME....SLAPNQTLvemdmSSVP
  146-  190 (66.20/41.93)	GPAATS.NPS..VMNQQPISAGTIPLGRNNSAeanmSLSQQQTL.....ATVP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30630 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LAPNQTLVEMDMSSVPPVSGPAATSNPSVMNQQPISAGTIPLGRNNSAEANMSLSQQQTLA
127
187










Molecular Recognition Features






MoRF SequenceStartStop




1) GYVEFWEVRPTNK
2) PRRVYYPAM
195
26
207
34