<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30623

Description Uncharacterized protein
SequenceMSCRESKPERLNTDSVSPSIPASPVNDIVVRSGSVTEGYSEQVKLRGAFTEYPRVASDNHGIILSGLPSGGTLQANFPLMSSDRSADSWDGIPRISSSVASRFSSSSSVEMVDDSFSKTERNETALDPSGLRYFNFGPHQSSAPSIAERVNYELAGSMNDELYDRYEQHVAEAETARREAFEESIKRRKAEKDAIEARRRAKASETFYADELRRRREIEEALAKDKEKADQMKAQLNKLLRDLQAAQAQNSSLESQLLDSDTQVQELEQKMFSAVDLLQKYRKERDELEVERDDALKSAEALREQHSDGSSFTSTSSLFAEFYFHEIEEATRTFDPALKIGEGGYGCIYRGLLRHTQVAVKMLHPHSLQGPSEFQQEVNILSKLRHPNVVTLIGACPEAWTLVYEYLPNGSLEDRLTCKDNTPPLSWQTRIRVAAELCCALIFLHSCTARGIIHGDLKPANVLLDANFVSKLSDFGICRVLSEDDFSENSTTLCYRTDPKGTFAYMDPEFLETGELTRKSDVYSFGIILLRLLTGRSALGIKNEIQYALDKGNLKNLLDPTAGDWPFVQAKQLAHLAMSCCEKNSRCRPELSSEVWKVLEPMRASCGASSFRMDSEEHCDIPSYFICPIFQEIMQDPVVAADGFTYEAEALRGWLDSGHETSPMTNLTLSHKNLVPNHALRSAIQEWLQQN
Length691
PositionTail
OrganismSolanum tuberosum (Potato)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum.
Aromaticity0.08
Grand average of hydropathy-0.485
Instability index53.15
Isoelectric point5.20
Molecular weight77474.97
Publications
PubMed=21743474

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30623
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     319.30|      99|     166|     335|     443|       1
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  335-  443 (162.84/146.46)	DPA.LKIGEggygciyrgLLRHTQV.AVKMLHPHSLQGPSEFQQEVNILSKLRHPNVVTLIGACPEAWTLV....YEYLPNGSLEDRLTCKDNTPPLSWQTRIRVAAElCCALIF
  507-  611 (156.46/114.55)	DPEfLETGE.........LTRKSDVySFGIILLRLLTGRSALGIKNEIQYALDKGNLKNLLDPTAGDWPFVqakqLAHLAMSCCEKNSRCRPELSSEVWKVLEPMRAS.CGASSF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.83|      20|      24|     172|     195|       2
---------------------------------------------------------------------------
  176-  195 (32.33/23.63)	ARREA......FEESIKRRKAEKDAI
  197-  222 (26.50/ 9.57)	ARRRAkasetfYADELRRRREIEEAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     100.64|      24|      24|      66|      89|       3
---------------------------------------------------------------------------
   38-   64 (31.52/17.25)	GYSE.QVKLRGAFteyPRVAS.DNHGIIL
   66-   89 (41.57/25.03)	GLPS.GGTLQANF...PLMSS.DRSADSW
   91-  116 (27.54/14.16)	GIPRiSSSVASRF...SSSSSvEMVDDSF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30623 with Med32 domain of Kingdom Viridiplantae
Unable to open file!