<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30618

Description Uncharacterized protein
SequenceMADDGLDRWRGFFRGAGVGICEVIEKAILVAAADEPQEFLRRRDRIAERLFNALLARPSCHGCTASTGSVPPATPAVAEDKGSVRRVPDKECKVDSSSLGAPGRGGLGGGGSISEDDDDSDSDSEDDERLRRAAASNYGHNYDDDNDDDEEQDAAAPAEEDHHAEDDDPEAEELEALTNEIDEESQILGEVLRIKELLLHKQDHSDTTLFDSLRRLQLMQLSVSTLKATEIGRAVNGLRKHSSQQIRHLVQTLIDDWKILVDEWVSTTNVALADNSPGTSNPSVVDDDEEEEGLPSPPLDEGAFFAPETTAIQLSAFFDEMDEDGNLRHNNDGRLGNKRENNGRRPPNYSTVSKPELTRPVGTVERDQFRRPELTRQEPPMRHTNQQRPQGSNLQAKPHVMLNKQSRPPSSDSGSIMRPMKAATQQKPIGEMKYKQTQEHFGVERKPAMGHVDKSRLRAQPSAGVRLESAKPKTQDGLESNGRLEAAKRRLQERYQEAENAKKQRTIQVMELGDIPKPKSHTKQPMAKSRNNIRSRVLGRR
Length541
PositionUnknown
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.04
Grand average of hydropathy-0.973
Instability index63.66
Isoelectric point5.31
Molecular weight60165.76
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30618
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      92.17|      16|      16|     377|     392|       1
---------------------------------------------------------------------------
  323-  337 (20.83/ 8.59)	EDGNLRHNNDG.R.LGN
  377-  392 (31.13/16.21)	QEPPMRHTNQQ.RPQGS
  395-  411 (19.38/ 7.52)	QAKPHVMLNKQsRPPSS
  416-  431 (20.82/ 8.58)	IMRPMKAATQQ.KPIGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.58|      20|      20|     121|     140|       2
---------------------------------------------------------------------------
  121-  140 (34.57/16.34)	DSDSEDDERLRRAAASNYGH
  143-  162 (36.01/17.29)	DDDNDDDEEQDAAAPAEEDH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      67.59|      15|      16|     462|     476|       4
---------------------------------------------------------------------------
  440-  459 (17.85/ 9.27)	HFGVERKPAmghvdKSRLRA
  462-  476 (25.56/16.55)	SAGVRLESA.....KPKTQD
  480-  493 (24.18/15.24)	SNG.RLEAA.....KRRLQE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.07|      18|      20|     174|     193|       7
---------------------------------------------------------------------------
  174-  193 (23.60/19.30)	LeaLTNEIDEESQILGEVLR
  197-  214 (30.47/18.44)	L..LLHKQDHSDTTLFDSLR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30618 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GCTASTGSVPPATPAVAEDKGSVRRVPDKECKVDSSSLGAPGRGGLGGGGSISEDDDDSDSDSEDDERLRRAAASNYGHNYDDDNDDDEEQDAAAPAEEDHHAEDDDPEAEELEALTNEID
2) SAFFDEMDEDGNLRHNNDGRLGNKRENNGRRPPNYSTVSKPELTRPVGTVERDQFRRPELTRQEPPMRHTNQQRPQGSNLQAKPHVMLNKQSRPPSSDSGSIMRPMKAATQQKPIGEMKYKQTQEHFGVERKPAMGHVDKSRLRAQPSAGVRLESAKPKTQDGLESNGRLEAAKRRLQERYQEAENAKKQRTIQVMELGDIPKPKSHTKQPMAKSRNNIRSRVLGRR
3) VALADNSPGTSNPSVVDDDEEEEGLPSPPLDEGAFFA
62
315
270
182
541
306










Molecular Recognition Features






MoRF SequenceStartStop




1) DERLRRAAASNYGHNY
2) MRPMKA
3) SHTKQPMA
127
417
520
142
422
527