<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30616

Description Uncharacterized protein
SequenceVQKTEKASFADFCGNEVLQVRAYGQAYIGLGVNIRSGRFILQSPKNILPPPALLDWEEALNKGSNTATEVFSSLRTRSILHLLVSTGSFFGLKVYEQSQGTLKIPEAILHGSDLMVMGFPQCANAYHLLMQLDKDFRPVFHLLETQSDASNKFNANIDAKEAMRVNKIDIGQMEKIKYEKNSNSFDAKLHSLQSIENCDNMMDNELLIQNSVDPLPLLPACSPSFSSLVDETFECEHGSSLPSASPVRSLSLGPQGISTRAISPMQDGALSHAQANNTSIVRPGVGVNSYFPTSLRHLQSTNAFSSSNPVRNSSAIKLSNSKSNHDLSSLSSPSEHGIADGNKPFQLAPSSMLPAHLVRSSPAIEGLGKAITVGSDCAPRKRPLSDFLLDLPSLQGLKSSEPNKRRKISESAKSSLTLQAYSSSSQSGTSLTHGNILAERSNCVPATVYASVLLHVIRHCSLCIKHAQLTAQMDSCAIPYVEEVGMRSPSSNLWFRLPFAQDDSWKHICLRLGKAGSMSWDVRINDPHFKELWELNGGSTSTPWGVGVRIANTSEMDSHISFDADGVVLTYSTVDADSVKRLVSDLQRLANARVFARGMRRLIGVKLDDKLDDNHISVGIKSQSVNKGHNDADRLSEQMGKPFRIEAVGLMSFWFSYGHMPMVHFVVEWETAKEGCTMHVSPDQLWPHTKFLEDFVNGGEVASFLDCIRLTAGPLLALGGAIRPARMPVTVSTGYSSMSKQTNNVPSQGPLANGSSATTMHHASAPSNGTAHLGGHTLHTAAMLSAAGRGGPGLVPSSLLPFDVSVVLRGPYWIRIIYRKKFSVDMRCFAGDQVWLQPATPPKGGPSVGGSLPCPQFRPFIMEHVAQGLNALEPAFMNATQPGPHLNTSAGAPQSAPIANRLNATPGGAMSRPTSSVANHVAASLSRAGNAMLSSSGLASGIGGASVRLTPGTGLPVHMKGELNTAFIGLGDDGGYGGGWVPLAALKKVLRGILKYLGVLWLFAQLPELLKEILGSILKDNEGALLNLDQEQPALRFYVGGYVFAVSVHRVQLLLQVLSVKRFHHQQQQQQAQSNAQEELTSAEINEICDYFSRRVASEPYDASRVASFITLLTLPISVLREFLKLITWKKGFSQAHGDIATAQRARIELCLENHSGSASDDRAESSLAKSNIHHDRAHSSVEFALTFVLDHALIPHMNVAGGAAWLPYCVSVRLRYSFGDNSHISFLAINGSHGGRACWLQSEDWDRCKQKVARAVETVNGTPAVAEPGQGRLRMVAEMIQKQLQLCLQQLRDGPLSAGSTAS
Length1304
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.07
Grand average of hydropathy-0.158
Instability index52.27
Isoelectric point8.42
Molecular weight140990.76
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30616
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      86.37|      18|      19|     746|     763|       1
---------------------------------------------------------------------------
  724-  743 (25.03/11.44)	PARMPvtVSTGYSSMSKQTN
  746-  763 (32.61/17.18)	PSQGP..LANGSSATTMHHA
  766-  781 (28.73/14.24)	PSNGT..AHLGGH..TLHTA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     199.13|      68|     159|     455|     538|       2
---------------------------------------------------------------------------
  455-  538 (109.02/114.91)	HV.........................IRHCSLCIKHA...QLTAQMDScaiPY.VEEVGMRSpssnLWF...RLP...FAQDdsW...KHICLRLGKAGSMsWdvrindPHFKELWEL.NGG
  593-  699 (90.11/58.67)	RVfargmrrligvklddklddnhisvgIKSQSVNKGHNdadRLSEQMGK...PFrIEAVGLMS....FWFsygHMPmvhFVVE..WetaKEGCTMHVSPDQL.W......PHTKFLEDFvNGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.47|      15|      18|     885|     901|       3
---------------------------------------------------------------------------
  887-  901 (26.98/18.31)	NTSAGAPQSAP...IANR
  903-  920 (23.48/ 7.77)	NATPGGAMSRPtssVANH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.10|      19|      22|     976|     995|       4
---------------------------------------------------------------------------
  976-  995 (31.90/23.86)	Y.GGGWV....PlAALKKVLRGILK
  996- 1019 (25.20/13.45)	YlGVLWLfaqlP.ELLKEILGSILK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     271.16|     110|     137|     176|     297|       5
---------------------------------------------------------------------------
  176-  220 (25.09/23.36)	...................................................................................................IKYEKNSNSFDakLHSLQSiENCDNMMDNELLIQnsVDPLPLLPA
  221-  355 (163.62/133.17)	CSPSFSSLvDETFECehGSS.LPSASPVRSLSLG.P..QGIstRAISPMQDGALShaQANNTSIVRPGVGVNSYFPTSLRHlqstnafsssnpvrnssaIKLSNSKSNHD..LSSLSS.PSEHGIADGNKPFQ..LAPSSMLPA
  360-  433 (82.45/49.49)	SSPAIEGL.GKAITV..GSDcAPRKRPLSDFLLDlPslQGL..KSSEPNKRRKIS..ESAKSSLTLQAYSSSSQSGTSLTH...............................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.04|      22|     405|     542|     566|       6
---------------------------------------------------------------------------
  543-  564 (42.47/33.93)	PWGVGVRIANTSEMDSHISFDA
 1208- 1229 (42.57/20.87)	PYCVSVRLRYSFGDNSHISFLA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30616 with Med14 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PVRNSSAIKLSNSKSNHDLSSLSSPSEHGIADGNKPFQ
2) SMSKQTNNVPSQGPLANGSSATTMHHASAPSNGTAH
3) TQPGPHLNTSAGAPQSAPIANRLNATPGGAMS
309
737
880
346
772
911










Molecular Recognition Features






MoRF SequenceStartStop




NANANA