<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30616

Description Uncharacterized protein
SequenceVQKTEKASFADFCGNEVLQVRAYGQAYIGLGVNIRSGRFILQSPKNILPPPALLDWEEALNKGSNTATEVFSSLRTRSILHLLVSTGSFFGLKVYEQSQGTLKIPEAILHGSDLMVMGFPQCANAYHLLMQLDKDFRPVFHLLETQSDASNKFNANIDAKEAMRVNKIDIGQMEKIKYEKNSNSFDAKLHSLQSIENCDNMMDNELLIQNSVDPLPLLPACSPSFSSLVDETFECEHGSSLPSASPVRSLSLGPQGISTRAISPMQDGALSHAQANNTSIVRPGVGVNSYFPTSLRHLQSTNAFSSSNPVRNSSAIKLSNSKSNHDLSSLSSPSEHGIADGNKPFQLAPSSMLPAHLVRSSPAIEGLGKAITVGSDCAPRKRPLSDFLLDLPSLQGLKSSEPNKRRKISESAKSSLTLQAYSSSSQSGTSLTHGNILAERSNCVPATVYASVLLHVIRHCSLCIKHAQLTAQMDSCAIPYVEEVGMRSPSSNLWFRLPFAQDDSWKHICLRLGKAGSMSWDVRINDPHFKELWELNGGSTSTPWGVGVRIANTSEMDSHISFDADGVVLTYSTVDADSVKRLVSDLQRLANARVFARGMRRLIGVKLDDKLDDNHISVGIKSQSVNKGHNDADRLSEQMGKPFRIEAVGLMSFWFSYGHMPMVHFVVEWETAKEGCTMHVSPDQLWPHTKFLEDFVNGGEVASFLDCIRLTAGPLLALGGAIRPARMPVTVSTGYSSMSKQTNNVPSQGPLANGSSATTMHHASAPSNGTAHLGGHTLHTAAMLSAAGRGGPGLVPSSLLPFDVSVVLRGPYWIRIIYRKKFSVDMRCFAGDQVWLQPATPPKGGPSVGGSLPCPQFRPFIMEHVAQGLNALEPAFMNATQPGPHLNTSAGAPQSAPIANRLNATPGGAMSRPTSSVANHVAASLSRAGNAMLSSSGLASGIGGASVRLTPGTGLPVHMKGELNTAFIGLGDDGGYGGGWVPLAALKKVLRGILKYLGVLWLFAQLPELLKEILGSILKDNEGALLNLDQEQPALRFYVGGYVFAVSVHRVQLLLQVLSVKRFHHQQQQQQAQSNAQEELTSAEINEICDYFSRRVASEPYDASRVASFITLLTLPISVLREFLKLITWKKGFSQAHGDIATAQRARIELCLENHSGSASDDRAESSLAKSNIHHDRAHSSVEFALTFVLDHALIPHMNVAGGAAWLPYCVSVRLRYSFGDNSHISFLAINGSHGGRACWLQSEDWDRCKQKVARAVETVNGTPAVAEPGQGRLRMVAEMIQKQLQLCLQQLRDGPLSAGSTAS
Length1304
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.07
Grand average of hydropathy-0.158
Instability index52.27
Isoelectric point8.42
Molecular weight140990.76
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30616
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      86.37|      18|      19|     746|     763|       1
---------------------------------------------------------------------------
  724-  743 (25.03/11.44)	PARMPvtVSTGYSSMSKQTN
  746-  763 (32.61/17.18)	PSQGP..LANGSSATTMHHA
  766-  781 (28.73/14.24)	PSNGT..AHLGGH..TLHTA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     199.13|      68|     159|     455|     538|       2
---------------------------------------------------------------------------
  455-  538 (109.02/114.91)	HV.........................IRHCSLCIKHA...QLTAQMDScaiPY.VEEVGMRSpssnLWF...RLP...FAQDdsW...KHICLRLGKAGSMsWdvrindPHFKELWEL.NGG
  593-  699 (90.11/58.67)	RVfargmrrligvklddklddnhisvgIKSQSVNKGHNdadRLSEQMGK...PFrIEAVGLMS....FWFsygHMPmvhFVVE..WetaKEGCTMHVSPDQL.W......PHTKFLEDFvNGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.47|      15|      18|     885|     901|       3
---------------------------------------------------------------------------
  887-  901 (26.98/18.31)	NTSAGAPQSAP...IANR
  903-  920 (23.48/ 7.77)	NATPGGAMSRPtssVANH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.10|      19|      22|     976|     995|       4
---------------------------------------------------------------------------
  976-  995 (31.90/23.86)	Y.GGGWV....PlAALKKVLRGILK
  996- 1019 (25.20/13.45)	YlGVLWLfaqlP.ELLKEILGSILK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     271.16|     110|     137|     176|     297|       5
---------------------------------------------------------------------------
  176-  220 (25.09/23.36)	...................................................................................................IKYEKNSNSFDakLHSLQSiENCDNMMDNELLIQnsVDPLPLLPA
  221-  355 (163.62/133.17)	CSPSFSSLvDETFECehGSS.LPSASPVRSLSLG.P..QGIstRAISPMQDGALShaQANNTSIVRPGVGVNSYFPTSLRHlqstnafsssnpvrnssaIKLSNSKSNHD..LSSLSS.PSEHGIADGNKPFQ..LAPSSMLPA
  360-  433 (82.45/49.49)	SSPAIEGL.GKAITV..GSDcAPRKRPLSDFLLDlPslQGL..KSSEPNKRRKIS..ESAKSSLTLQAYSSSSQSGTSLTH...............................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.04|      22|     405|     542|     566|       6
---------------------------------------------------------------------------
  543-  564 (42.47/33.93)	PWGVGVRIANTSEMDSHISFDA
 1208- 1229 (42.57/20.87)	PYCVSVRLRYSFGDNSHISFLA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30616 with Med14 domain of Kingdom Viridiplantae
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