<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30615

Description Uncharacterized protein
SequenceMIKNLKDQYFPELSELFNKISVKLQHVDNMIPPQKPSEQYDRMKNFKTMLGRILHMLQISKSSIQPAMRDKVPQYEKQIISILSSQRTKPVQPQIQQQFQPPAGQAPDSSILQQQQTSQNLQQHDSHTNPQASLSSKSTGLQSSGVTGIQHVPLPPTTNFSATTQHQAVSNLEAAQRGNFNSLQHGLVSGALQQGTMNTQLQTSGSMLSHNPISTMQASGNSMQPNASSLQQQQQDHHLMQSEQMKRQMYQYQQKQQMLQQQLPVQQQQQKQQQVQMQVPQLHAGNDVRQGTAMKPGIYQHHLSQRSNYYQQQLKQSGDFPISSPNLQASSPQISHHSPQIDKHNQLSSQIKTGTPLHSANSPFVPSPSPSIAPSPIPVDSDKPHSIISSLSNTGQTGHQQTSLAPQTKSMSLNTPGISASPLLAEFTSVDGSQANMPTQAPTKSNAAERPMDRLLKALRTTQRESLNAAVSDIRSVVSMMDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITNDGSGASKKMKRDTSAMPLNVSSTGSVDDSFKQTFSADTPDVQSTATSRANKRQKVEVNHALLEEIQAINQELIDTELNVCEEDADSFAAASEGTVIKCTYTPVAVSPSLKSMLASAQTVSFLNKARALDIVDISAHFFLLECGRV
Length662
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.04
Grand average of hydropathy-0.626
Instability index54.78
Isoelectric point9.11
Molecular weight72431.47
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30615
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     232.11|      34|      35|     301|     334|       1
---------------------------------------------------------------------------
   85-  111 (37.80/14.80)	...SQ..RTKPVQPQI...QQ..QF....Q.....P.........PAGQAPD.........SS................I
  190-  232 (32.77/11.68)	GALQQ..GT..MNTQL...QTSGSMlshnPI...STmqasgnsmqPN..ASS.........LQ................Q
  259-  298 (33.37/12.05)	..LQQ..QLPVQQQQQ...KQQ.QV....QM...QV.........PQLHAGNdvrqgtamkPG................I
  301-  334 (64.08/31.10)	HHLSQ..RSNYYQQQL...KQSGDF....PI...SS.........PNLQASS.........PQ................I
  336-  388 (30.02/ 9.98)	HHSPQidKHNQLSSQI...K.TGT.....PLhsaNS.........PFVPSPS.........PSiapspipvdsdkphsiI
  389-  422 (34.07/12.49)	SSLSN..TGQTGHQQTslaPQTKSM....SL...NT.........PGISA.S.........P..................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.00|      15|      26|     490|     504|       4
---------------------------------------------------------------------------
  490-  504 (25.22/17.79)	GNGSRAAVGEDLVAM
  519-  533 (25.78/18.34)	GSGASKKMKRDTSAM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      79.44|      20|      39|     123|     146|       5
---------------------------------------------------------------------------
  123-  142 (34.37/14.66)	QHDSHTNPQAS....LSSKSTGLQ
  150-  163 (18.17/ 7.92)	QH.VPLPPTTN....FSAT.....
  165-  188 (26.89/ 8.73)	QHQAVSNLEAAqrgnFNSLQHGLV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.25|      28|      30|       6|      33|       6
---------------------------------------------------------------------------
    6-   33 (49.61/32.20)	K..DQY..FPELSELFNKISVKLQHVDNMIPP
   35-   66 (38.64/23.59)	KpsEQYdrMKNFKTMLGRILHMLQISKSSIQP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30615 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ASPLLAEFTSVDGSQANMPTQAPTKSNAAERPMDRLLKALRTTQRESLNAAVSD
2) PVQPQIQQQFQPPAGQAPDSSILQQQQTSQNLQQHDSHTNPQASLSSKSTGLQSSGVTGIQHVPLPPTTNFSATTQHQAVSNLEAAQRGNFNSLQHGLVSGALQQGTMNTQLQTSGSMLSHNPISTMQASGNSMQPNASSLQQQQQDHHLMQSEQMKRQMYQYQQKQQMLQQQLPVQQQQQKQQQVQMQVPQLHAGNDVRQGTAMKPGIYQHHLSQRSNYYQQQLKQSGDFPISSPNLQASSPQISHHSPQIDKHNQLSSQIKTGTPLHSANSPFVPSPSPSIAPSPIPVDSDKPHSIISSLSNTGQTGHQQTSLAPQTKSMSLNTPGI
420
90
473
418










Molecular Recognition Features






MoRF SequenceStartStop




NANANA