<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30613

Description Uncharacterized protein
SequenceMRNISSKLLIMEKRTSEHLERRKQLRNQLQLANTGQALQGGNSSVRPEAGMMATPRPTSQPMMPQTSGLVPNQHMVYPRTTNLQIEVEQKHPGVMTIPDQRPKFQPKGITTVRPGVSPWQMQSGASQSQSKYASRQAQTTNFVGCSPPSVSKPARGLTSLHNHQPGQNGSSVGKQQPQLTRMNQRSLSANQQEMDMQKYQMLIAQQTDISKMQPSQLGGWNNQKDTRQSNLLRSPVEASEREPVTSPLQQIADAQQSTLLCQNSQNTATMDSAREYDLIEGMFLQIKSWKDAYFTQFVELERRIVVPTLTEEQFLSLPEAKANEYKRKAYAKKSIRKILNFLLLVKSDVNEGLKLDFPKYKEDIHKLVAFIDRGKAHNAEMNTGYQLQNCHEQPQVINLTGNASSISGGKSRQQKQPADTSILQSRQTNMARTPPPHEQSNGNHLLGIASPSFSSPGSLPSCSSNMFESSTPTPVANPVVAPASCCAPLIPMDVDSISAFLLHDNSAPPSPKVNGSDQVTRTKLTIPSSPCQADIAAGQAEVQAGGGDGTPVTEKPIDRLLDAIRSSSPAALRSSANSIWSVLSISDTVPHGQIGANMDGKFFQQQWGGYNTVRKMKRVFNDTATHSESLPLGSMDGSCMAFECDASNSGSSSEQNIKRPKTPNANDALLKEIKSINDTLIDTVVSISMDGIAPCDSGTTIKLSYSAVSLSPAVKSLFATSETSLVLPMKLFVPADYPSSSPVPISDEGDEVPRRNSSAISASVDVAYRHVLRGLLEPLSIEAMARAWDACVRKAVTQFAHRHGGGTVNSIFGGWERCAAA
Length821
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.05
Grand average of hydropathy-0.506
Instability index57.55
Isoelectric point8.94
Molecular weight89321.86
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30613
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      91.17|      22|      26|      55|      79|       1
---------------------------------------------------------------------------
   34-   52 (25.97/ 6.34)	.....TGQA..LQGGNSSVRPEAGMM
   55-   76 (43.04/24.93)	P..RPTSQP..MMPQTSGLVPNQHMV
   98-  120 (22.16/ 6.46)	PdqRPKFQPkgITTVRPGVSPWQ...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.46|      26|      27|     132|     157|       2
---------------------------------------------------------------------------
  132-  157 (45.47/24.96)	YASRQAQTTNFVGCSPPSVSK.PARGL
  161-  187 (41.99/22.47)	HNHQPGQNGSSVGKQQPQLTRmNQRSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      31.77|       9|      53|     634|     645|       3
---------------------------------------------------------------------------
  634-  645 (11.21/16.18)	SMDGscMAfECD
  688-  696 (20.56/10.41)	SMDG..IA.PCD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.94|      20|      55|     435|     458|       4
---------------------------------------------------------------------------
  391-  434 (20.57/10.40)	HEQPQVINLTGNASsisggksrqqkqPADTSilqsrqtnmartP
  437-  456 (38.37/18.21)	HEQSNGNHLLGIAS............PSFSS............P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.88|      26|      26|     313|     338|       5
---------------------------------------------------------------------------
  313-  338 (42.58/34.36)	QFLSLPEAKANEYKRKAYA..KKSIRKI
  340-  367 (38.30/30.14)	NFLLLVKSDVNEGLKLDFPkyKEDIHKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     225.43|      72|     232|     478|     583|       6
---------------------------------------------------------------------------
  506-  583 (111.69/112.14)	SAPPSPKVNGSDQVTRTKltipSSPCQADIAAGQAEVQAGGGDgtPVTEKPIDRLLDA.IRSS.SPAALRSSANSIWSVL
  739-  812 (113.74/54.92)	SSSPVPISDEGDEVPRRN....SSAISASVDVAYRHVLRGLLE..PLSIEAMARAWDAcVRKAvTQFAHRHGGGTVNSIF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     115.38|      35|     234|     229|     263|       8
---------------------------------------------------------------------------
  229-  263 (59.34/32.94)	SNLLRSPVEASEREPVTSPLQQIA.......DAQQSTLLCQN
  464-  505 (56.04/30.72)	SNMFESSTPTPVANPVVAPASCCAplipmdvDSISAFLLHDN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30613 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NISSKLLIMEKRTSEHLERRKQLRNQLQLANTGQALQGGNSSVRPEAGMMATPRPTSQPMMPQTSGLVPNQHMVYPRTTNLQIEVEQKHPGVMTIPDQRPKFQPKGITTVRPGVSPWQMQSGASQSQSKYASRQAQTTNFVGCSPPSVSKPARGLTSLHNHQPGQNGSSVGKQQPQLTRMNQRSLSANQQEMDMQKYQMLIAQ
2) NLTGNASSISGGKSRQQKQPADTSILQSRQTNMARTPPPHEQSNGNHLLGIAS
3) SKMQPSQLGGWNNQKDTRQSNLLRSPVEASEREPVTSPLQ
3
398
210
205
450
249










Molecular Recognition Features






MoRF SequenceStartStop




NANANA