<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30609

Description Uncharacterized protein
SequenceGDLNFWFLLAPSLLLLHCCCHGYAQFNLCSLFLCVITLQALSQPNKRLRLLSEHVPHGYRRKSLFDVLTRCNVPLLRATWFVKVTYLNQVRPTSSSISTGASDNQRSNQWTKDVVEYLQQLLDEFSLKEAHLSFKEQPSAGLISGTTQVKLKNEAPSAGGDTEEPLVHFKWWYMVRLVQWHLTEELLVPSVLIEWSCHQLQERDSVEALELLLPIVLGLVETITLSQTYVRMFVEILVKRLSDASAVDNPKRSSISSVIAELLRYMVLAVPDTFVSLDCFPLPSFVAPDVYGRGALLKITGGGEMSSSKRRDVYRYLSCGYAVCSIQRRASDLATLASPNVHARGAAKVVQALDRALVTGNLTMAYSSLFNDLSDALMEERWIKEVSPCLQSSLMWIGTVELSLICSIFFLCEWATCDYRDCRTSPSQNVKLTGRRDLSQIHLAVSILKNKMTEMNKLSRSKSSSRIAVNNIGKGSSLNDASVAATKVGDSSGLRSNGKNEEEKKEKKDIFESPGPLHDIIVCWLDQHEVSSAAGFKRVDVLIIELIRSGVFYPQAYVRQLIISGVTDKNGTLLDMERKRRHHRILKQLPGSSLFDILEEDIVAEQQQLHEVLSTYSSERRLVLSELSSGQSFDASNRGGYTSSSYPRIPSGGTNHGGVPEQVEDVKVLVSSLLCFIYPHSAESEQNETKINFQGSSTSTLTQVDTGEAKIGCEDCMRINGQKLDERASPFQAFPLIQSDEEDVWWVRKGTELQESFKAEPALKSIKQTSRGRAKVVRKTQNLAQLTTAKIEGSQGEASTSHLCESKLSCPHHKPSTDGDNAKDADHTRMTNLAEVGKSLKKLRLLERRSISVWLLKSVRQLVEGNETTACKASNSISSFSSQPEDKTASKWRLGDEELMSILYILDTCCDLASATRFLVWLLAKIRGGQVGRSVAHMKNRDNHVCQVGEAFVFSSLLRYENILLATDLLPEVLNASTNRNFVLATARHPAPAAFPYTRYFLRKYRDVASVVRWEKNFRTTCDQRLLADLDNGRSIDGDFVSSSGVLGGEEIDDQVRQKLNGRGSRIIPNMKEIVQRQAEEIQRNLKEKKIPAAPKSPSFEKEDSYQIAHDTVLGLVECIRQNGGASPDGDPSAVASAVSAIVVNAGHVIAKHLDFAGGNYHGVASIGNSLSFVRHTLHIHISSLCLLKEALGDRFSRVFEVALAVEASSAVTAALAPPKVQRNQFQPSSETHDAYGNHTNEPLSTSGKGFVGRAAKLAAAISALVVGAVVHGAVSLERMIAVLKVKDGLEVQQVLRGLRPSTNGASRSSVTFKMDNSIEVLVHWFRILLGNCRTIYDGLIADILGESYVLALSRLQQKLPLSVVFPPAYSIFAMVRWRQYILSREDMQVYQSIANAINDITRHQPFRDICFRNTHQLYDLLAADVGDSEFAAMLETHCSDKNVKQLFVPLRGRLFLNSLVDCKTPAAIQVDGSEPGEAKENELKLLSERLVQSLDTLQPAKFHWQWVELRLLLDEQALAEKLDKAEKSKIPMPILMTLADGLRKLSPNSESFTLSESEKGFTEIILSRLVARPDAAPLYSEVVHLLGKLQESLVVDVKWILQGQDAVLGRKSTRQQLLTIATRRGVPIKAQVWKPWGWSSLLSDVMANRSAKRKLEAAPIEEGEVVDDSADAKRPSKSTLHINKYVTEKAFAELMLPCIDRSSPEFRSIFAGELIKQMGTVSEHIKAISRNGAKQVGLVPSGNDVSSNKSSGRKGIRGGSPNIGRRGTVGNDPTPPSASALQAIVWLRLQFIIRLLQVILADRGMRHTLAPAILSLLASRIIYEDADFPPPPASPIASRREVDSLLEPPMDVLLDRPSESLFERLLCVFHALLGNCKPSWMKSKPVSKPTVRAPSRDFPAFDNEVAVALQSALDHVELPGAIRRRIQAAMPILPPARHPSIHCQPPQLSLAALSPLQSIPSTSGPQQKSTSHSWVPTNISSRSKAVLPPQDPEMEVDPWTLLEDGTSCPSTSSGSNSASGITPDHSNLKACSWLKGAVRVRRTELTYIGSLDDDS
Length2056
PositionKinase
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.06
Grand average of hydropathy-0.198
Instability index49.58
Isoelectric point8.45
Molecular weight227111.07
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30609
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.36|      14|      48|     282|     295|       1
---------------------------------------------------------------------------
  282-  295 (26.54/18.92)	LPSFVAPDVYGRGA
  333-  346 (22.81/14.92)	LATLASPNVHARGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.05|      18|      75|     503|     520|       2
---------------------------------------------------------------------------
  503-  520 (32.45/19.54)	EKKEKKD.IFES.PG.PLHDI
  577-  597 (19.59/ 8.71)	ERKRRHHrILKQlPGsSLFDI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.31|      46|      79|    1307|    1353|       3
---------------------------------------------------------------------------
 1307- 1353 (77.41/61.73)	SRSSVTFKMDNSIEVLVHWFRILLG.............................NCRTIYDGLIADIlGESYVLAL
 1360- 1434 (67.90/48.72)	LPLSVVFPPAYSIFAMVRWRQYILSredmqvyqsianainditrhqpfrdicfrNTHQLYDLLAADV.GDSEFAAM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.86|      27|      52|    1933|    1964|       4
---------------------------------------------------------------------------
 1933- 1964 (43.96/37.91)	ILPPaRHPSIHCQPPQLslaaLSPLQSIPSTS
 1987- 2013 (53.89/32.13)	VLPP.QDPEMEVDPWTL....LEDGTSCPSTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     117.06|      41|      79|    1126|    1185|       5
---------------------------------------------------------------------------
 1126- 1173 (55.04/67.07)	ASpdgdpSAVASAVSAIVV..NAGHVIAKHLDfAGGNyHGVASIGNS.LSF
 1208- 1251 (62.01/28.86)	AS.....SAVTAALAPPKVqrNQFQPSSETHD.AYGN.HTNEPLSTSgKGF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     202.55|      68|      79|     735|     807|       6
---------------------------------------------------------------------------
  735-  807 (99.48/82.20)	PLIQSDE.EDVWWVRKgTELQESFKaepALKSIKQTSRgRAKVVRKTQNLAQLT....TAKIEGSQGEASTSHLCESK
  815-  887 (103.07/67.12)	PSTDGDNaKDADHTRM.TNLAEVGK...SLKKLRLLER.RSISVWLLKSVRQLVegneTTACKASNSISSFSSQPEDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.37|      21|      23|     172|     192|       7
---------------------------------------------------------------------------
  172-  192 (40.27/24.56)	WYMVRLVQWHLTE..ELLVPSVL
  195-  217 (33.11/18.82)	WSCHQLQERDSVEalELLLPIVL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.15|      28|      52|    1755|    1782|       8
---------------------------------------------------------------------------
 1755- 1782 (51.69/35.81)	KGIRGG.SPNI.....GRRGTVGNDPTPPSASAL
 1804- 1837 (43.46/28.68)	RGMRHTlAPAIlsllaSRIIYEDADFPPPPASPI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.11|      32|      52|     629|     665|      10
---------------------------------------------------------------------------
  629-  665 (51.80/37.66)	SGQSFDASNRGGYTSSSYPRIPSGGTNHGgvpeqVED
  684-  715 (54.31/28.86)	SEQNETKINFQGSSTSTLTQVDTGEAKIG.....CED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.36|      18|      50|    1571|    1598|      11
---------------------------------------------------------------------------
 1571- 1588 (30.42/10.37)	VARPDAAPLYSEVVHLLG
 1621- 1638 (31.94/20.88)	IATRRGVPIKAQVWKPWG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.11|      10|      16|     962|     971|      17
---------------------------------------------------------------------------
  962-  971 (17.27/11.44)	NILLATDLLP
  981-  990 (18.84/13.30)	NFVLATARHP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.10|      10|      27|    1050|    1059|      18
---------------------------------------------------------------------------
 1050- 1059 (16.83/13.16)	EEIDDQVRQK
 1080- 1089 (16.28/12.44)	EEIQRNLKEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.38|      10|      23|     431|     440|      19
---------------------------------------------------------------------------
  431-  440 (16.88/10.02)	KLTGRRDLSQ
  451-  460 (17.50/10.68)	KMTEMNKLSR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30609 with Med12 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HLCESKLSCPHHKPSTDGDNAKDADHTRMT
2) LVPSGNDVSSNKSSGRKGIRGGSPNIGRRGTVGNDPT
3) SPLQSIPSTSGPQQKSTSHSWVPTNISSRSKAVLPPQDPEMEVDPWTLLEDGTSCPSTSSGSNSASGIT
802
1739
1955
831
1775
2023










Molecular Recognition Features






MoRF SequenceStartStop




NANANA