<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30607

Description Mediator of RNA polymerase II transcription subunit 13
SequenceMASSISSVSSTSNGSEHAVAAKGGDLLADADSTACRQSDLPLNNDIAGSKMVSKRSRSEITEVSSHAGKEVRENMQGTNGQGGCSWGWSEEGVVMDINILLSEFGDFSDFFQEDELDFGEPPGTAESHTLVTPASEYGDMAFIDSPSVAMDIPEQRLSPVGFTSMEAFNHQTMSPIQDVASKVQEPLKEIASSAGSQSLVLSSSRSDFLTRAEATLTFAPEYAAVEISSCESPATLFTNPYLPGSKKRGSCGFSSRVYSYDVTQSSKVESVGDKSEKSDKLIPANLSRDAGRSNLYTLVQGRKKESEKSLNNADEQSCKGETSRPVSGETSFSSSLSLQKKSDNMLNVGYFLLSMKTALATEIECITFQAAMCRIRHTLVSLRTKASAELKSALSSAMQTESGSNSDLVPKYDVKRKESIPARLSSDVDHEMYDRSRMENVGVWRSVVVPKGAKPLDCLSANTFTGTSPSVQRQPIVELLSAMALLVQQSTSFVDIALDMDDGDGSFFWLSLDEQRRRGFSCDPSMVHAGCGGLLGTCHSKDCAGVDLVDPLSAEVSESSMIGLLQSDIKSALKTAFANMDGPLSVIDWCRGRSNIAESAAMGDAYSFHYTTGDIRETSNSIPIGGDAMSPPQSSSDRGTSEEHHKGYHRVRPTIAVLPSPSLLVGYQDDWLKTSANCLKLWEKAPLEPYASAKPVTYYALCPDIDMLTSAATDFFMQLGTIYEVCKLGTHSPQHSGGQIEQSPGKYLPSGLVLVECPDQLKSSGSHSVSISSVTEYFQALSKSWSVKSFLSSLARVIKDIKLTSNISTNQKESSNIPCTVRPFTSSFSTSLIQGTYKTIAAWFIFMYSSHYCSSLISISFFLFFFMRTNAEKPTEINIVIHACTKGTG
Length889
PositionKinase
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.07
Grand average of hydropathy-0.257
Instability index55.77
Isoelectric point5.27
Molecular weight96110.76
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30607
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     165.25|      52|      54|      95|     147|       1
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   95-  147 (87.26/47.89)	MDI.NILLSEFGdFSDF..FQEDELDFGEPPGTAESHTLVTPASEYGDMAFIDSPS
  150-  204 (77.99/38.80)	MDIpEQRLSPVG.FTSMeaFNHQTMSPIQDVASKVQEPLKEIASSAGSQSLVLSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     208.08|      65|     505|      19|      90|       2
---------------------------------------------------------------------------
   19-   90 (101.13/82.53)	VAAKGGDLLADADSTACRQSDL..PLNNDIAGSKMVSKRSrseiTEVSShAGKEVRENMQGTngQGGCSW..GWSE
  527-  595 (106.95/66.90)	VHAGCGGLLGTCHSKDCAGVDLvdPLSAEVSESSMIGLLQ....SDIKS.ALKTAFANMDGP..LSVIDWcrGRSN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     126.91|      36|      87|     639|     675|       3
---------------------------------------------------------------------------
  639-  675 (60.45/53.71)	GTSEEHHKGYHRVRPTIAVLPSPSLLVGYQDDwLKTS
  729-  764 (66.46/51.74)	GTHSPQHSGGQIEQSPGKYLPSGLVLVECPDQ.LKSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.18|      26|      86|     378|     413|       4
---------------------------------------------------------------------------
  297-  323 (41.22/18.24)	TLVQGRKKESE..KS.LNNAdEQSCKGETS
  378-  406 (33.96/38.72)	TLVSLRTKASAelKSaLSSA.MQTESGSNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.19|      18|      18|     229|     246|       9
---------------------------------------------------------------------------
  229-  246 (32.77/18.05)	SCESPATLFTNPYLPGSK
  250-  267 (31.42/17.03)	SCGFSSRVYSYDVTQSSK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30607 with Med13 domain of Kingdom Viridiplantae
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