<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30589

Description Uncharacterized protein
SequenceMFDVVDTSHLDTAVMPRSSSLSLVPIDQDSSGTLSVHVPQKSCRFLSLQFCGDSTSGTESYACNTKGVSSTTSSAVEDDVPENDDVNKSVKQAHSILRNIHRSIFEEQVFDMVTCETFVQTKGVNVTGMWEDFLQIAIDQEILLCLSLVNSGQDSDSEMAGHEEHNNSEANLVLATTNGKQEPLKSDASGFLNPKSLEIYLLHMFHDNILRKVREKYRNIVRYQSPGQTAEPAGDECGLLGHFCMTVAHKIFSNKVQLELESVLSRVPYLHLQSLPTWHSRTSSWSLCLRIPPPILAADKPSDNGEPKYKSSRTQFNTKIVLKDVQISLFGEGSPSIAGSLTRKPSDGYLINNYNCDLEDLPTMVLQQVASQVINWLHEETQVLGMSVTRDFLGLYFDLDHGDTMLGLVAHVDPDDAYGCVSWYLTVDHPAEEDGMTPAANGPWAEEEKCRFLGYLSLEVLYSTLMDLINLCGTGHRPTR
Length480
PositionHead
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.07
Grand average of hydropathy-0.276
Instability index47.77
Isoelectric point4.89
Molecular weight53259.30
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30589
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.94|      38|      42|     286|     325|       1
---------------------------------------------------------------------------
  286-  325 (59.52/42.95)	SLCLRIPPPILAA..DKPSDnGE..PKYKSSRTQFNTkIVLKDV
  328-  369 (60.42/35.10)	SLFGEGSPSIAGSltRKPSD.GYliNNYNCDLEDLPT.MVLQQV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.59|      17|     122|      21|      37|       2
---------------------------------------------------------------------------
   21-   37 (29.97/19.96)	LSLVPIDQDSSGTLSVH
  146-  162 (30.61/20.54)	LSLVNSGQDSDSEMAGH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.51|      21|      46|     171|     192|       3
---------------------------------------------------------------------------
  171-  192 (31.69/26.41)	NLVLATTNGK.QEPlKSDASGFL
  219-  240 (34.82/23.91)	NIVRYQSPGQtAEP.AGDECGLL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30589 with Med17 domain of Kingdom Viridiplantae
Unable to open file!