<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30584

Description Uncharacterized protein
SequenceMSATARPLQETQNTVPTSVPNSESMDSSIGGSASGTPTSAAAVIASPVQGAATFSSTSDSVPSNVVVSATLTGSSLLSIGGLVKAHDTSQDSIRAKFSSPPGFVVAAPSFSYGVIPRTNLTSGNPQQSSSSGLKLTPPVPAAALQPPVPGQFLGTRPFPYNVVSHANVVPAAGQQIQLNTVPVQAHLQGGKFIPPSASSLQPPVPRQPVRPTPFGPGAVSLISPSPMQFPLSVPQGDAIKQTNFSFSGHNQFSTAEKDETILSSEKCTSDAVAVETTSDSSTLVNSQSVQTSQSMPLGTSTGLGINANACAASMLIPAAPSFTAHAEMPNARGIPGLTGNSSSATASTGATIKPTPTNSSISSPRPIIPVTAALPPTSTSVPVPFPVPQNVQQQTNVHYSSQPTMAPSPQASWSHPPQAGPMQHVSFSPYPGFFPAPFSLPVQGIPPAVPLPFIQPPGVSLMVSQVEPTAVTAGSLQPGSSMVAESSSSVVDQDKKSNNLDKDEGDTSNELENAWTAHKTETGAVYYYNSITGKSTYQKPSNFKGESEKATTQSNAVSWEKLAGTDWTIVTTSDGRKYYYDTKNKVSSWHVPAEVAELRKNQESGSTEGSATQLQDASTQGDKVSAPANIAAPAAQIGAHDSMALRSSGAPVSSSALDMVKKKLQEAGTPMTSPHSTSVPATSDANGLKATEAVAKGVINKDKAKDANGEGNMSDSSSDSDDEESGPSKEECIIQFKEMLKERGVAPFSKWDKELPKIVFDPRFKAVPSQSARRALFEHYVRTRAEEERKEKRAAQKAALDAFKQLLEEALEDIDHKTDYHSFKRKWGGDPRFEAIDRKERELLLNEKVKAADEKMRALRMAAATSFKSMLRDNRDITTSSRWSRIKESLRDDPRYKAVKHEQRETLFNEYIAELKSAVDEVERSAKAKRDEQDKLKERERELRKRKEREEKEMERVKLKVRRKEAEYSYRTLLVEMIKDPKASWTESKPKLEKDPQGRATNPDLTQEDAEKLFREHVKDLYERCVNDFRTLLAEVVTVEAAAAKNDDGKTVLNSWSEAKLLLKPDPRYSKMPSKDRESLWRRHTEDMLRRPKSVSDTKESPGTNGRNRMSSAADPLKRSPGRSHRRR
Length1128
PositionUnknown
OrganismMusa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zingiberales> Musaceae> Musa.
Aromaticity0.05
Grand average of hydropathy-0.648
Instability index53.30
Isoelectric point8.84
Molecular weight122045.04
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30584
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     342.51|      52|      53|     141|     192|       1
---------------------------------------------------------------------------
   41-   89 (41.68/17.84)	........AAVIASP................VQGaaTFSSTSdS.V..PSNV........V........VSATLTGSSLLSIGglVKA.HDTS
   90-  132 (56.42/27.01)	QDS....iRAKFSSP.................PG...FVVAA.PsF..SYGV...IPRTNL..........TSGN.......P..QQS.SSSG
  133-  189 (84.81/44.66)	LKLtppvpAAALQPP................VPG..QFLGTR.P.F..PYNV...VSHANV........VPAAGQQIQLNTVP..VQA.HLQG
  190-  241 (74.72/38.39)	GKF.ippsASSLQPP................VPR..QPVRPT.P.F..GPGA...VSL..I........SPS.PMQFPL.SVP..QGD.AIKQ
  359-  424 (48.41/22.03)	.........SSISSPrpiipvtaalpptstsVPV..PF.....P.V..PQNV...QQQTNVhyssqptmAPS.PQASW..SHP..PQAgPMQH
  432-  470 (36.47/14.61)	GFF.....PAPFSLP................VQG.iPPAVPL.P.FiqPPGVslmVS..QV........EPTA....................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.61|      17|      18|     923|     939|       2
---------------------------------------------------------------------------
  887-  903 (25.07/14.51)	KESLRDDPRYKAVKHEQ
  933-  949 (24.55/14.05)	QDKLKERERELRKRKER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     318.49|      63|      66|     752|     814|       3
---------------------------------------------------------------------------
  656-  727 (56.87/33.14)	....ALDMVKKKLQE.......A........G....TpmtsphSTSVPATSD.........ANGLKAteavakgvIN...KDKAKDANGEGNMSDSSSDSDDEESGP
  728-  795 (84.50/53.08)	SKEeCIIQFKEMLKE.........RgvapfsK....W......DKELPKIVF.........DPRFKA........VP...SQSARRALFEHYVRTRAEEERKEKRAA
  796-  859 (81.21/50.71)	QKA.ALDAFKQLLEE.......ALE......D....I......DHKTDYHSF...krkwggDPRFEA........I....DRKERELLLNE..KVKAADEK..MRAL
  963- 1024 (65.16/39.12)	RKE.AEYSYRTLLVE.......MIK......DpkasW......TESKPKLEK.........DPQGRA........TNpdlTQEDAEKLFREHVKDLY..ER......
 1025- 1080 (30.75/14.30)	....CVNDFRTLLAEvvtveaaAAK......N....D......DGKTVLNSWseaklllkpDPRYSK........MP...S.KDRESL...................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     151.88|      45|      45|     495|     539|       4
---------------------------------------------------------------------------
  495-  539 (78.00/56.52)	KKSNNLDKDEGDTSNELENA..........WTAHKTETGAVYYYNSITGKSTYQK
  547-  591 (54.30/36.81)	S........EKATTQS..NAvsweklagtdWTIVTTSDGRKYYYDTKNKVSSWHV
  599-  619 (19.58/ 7.91)	RKNQESGSTEG.SATQLQDA..........ST.......................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.91|      16|      19|    1094|    1109|       5
---------------------------------------------------------------------------
 1094- 1109 (29.67/16.61)	SVSD.TKESPGTNGRNR
 1112- 1128 (25.24/13.01)	SAADpLKRSPGRSHRRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.03|      18|      19|     284|     301|       6
---------------------------------------------------------------------------
  284-  301 (28.97/16.78)	VNSQSVQ..TSQSMPLGTS.T
  305-  323 (24.78/13.08)	INANACA..ASMLIPAAPSfT
  329-  348 (24.29/12.65)	PNARGIPglTGNSSSATAS.T
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30584 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HVPAEVAELRKNQESGSTEGSATQLQDASTQGDKVSAPANIAAPAAQIGAHDSMALRSSGAPV
2) KFIPPSASSLQPPVPRQPVRPTPFGPGAVSL
3) LKPDPRYSKMPSKDRESLWRRHTEDMLRRPKSVSDTKESPGTNGRNRMSSAADPLKRSPGRSHRRR
4) MSATARPLQETQNTVPTSVPNSESMDSSIGGSASGTPTSAAA
5) SFTAHAEMPNARGIPGLTGNSSSATASTGATIKPTPTNSSISSPRPIIPVTAALP
6) SQVEPTAVTAGSLQPGSSMVAESSSSVVDQDKKSNNLDKDEGDTSNELENAWT
7) SSALDMVKKKLQEAGTPMTSPHSTSVPATSDANGLKATEAVAKGVINKDKAKDANGEGNMSDSSSDSDDEESGPSKEECII
8) STSVPVPFPVPQNVQQQTNVHYSSQPTMAPSPQASWSHPPQAGPM
9) SWTESKPKLEKDPQGRATNPDLTQEDAEKL
10) TNFSFSGHNQFSTAEKDETILSSEKCTSDAVAVETTSDSSTLVNSQSVQTSQSMPLGTSTGL
11) VERSAKAKRDEQDKLKERERELRKRKEREEK
590
191
1063
1
321
464
654
378
984
242
922
652
221
1128
42
375
516
734
422
1013
303
952










Molecular Recognition Features






MoRF SequenceStartStop




1) CIIQFKE
2) GRKYYYD
3) LFEHYVR
4) LLLKP
5) LPKIVFDPRFK
732
575
776
1061
755
738
581
782
1065
765