<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30584

Description Uncharacterized protein
SequenceMSATARPLQETQNTVPTSVPNSESMDSSIGGSASGTPTSAAAVIASPVQGAATFSSTSDSVPSNVVVSATLTGSSLLSIGGLVKAHDTSQDSIRAKFSSPPGFVVAAPSFSYGVIPRTNLTSGNPQQSSSSGLKLTPPVPAAALQPPVPGQFLGTRPFPYNVVSHANVVPAAGQQIQLNTVPVQAHLQGGKFIPPSASSLQPPVPRQPVRPTPFGPGAVSLISPSPMQFPLSVPQGDAIKQTNFSFSGHNQFSTAEKDETILSSEKCTSDAVAVETTSDSSTLVNSQSVQTSQSMPLGTSTGLGINANACAASMLIPAAPSFTAHAEMPNARGIPGLTGNSSSATASTGATIKPTPTNSSISSPRPIIPVTAALPPTSTSVPVPFPVPQNVQQQTNVHYSSQPTMAPSPQASWSHPPQAGPMQHVSFSPYPGFFPAPFSLPVQGIPPAVPLPFIQPPGVSLMVSQVEPTAVTAGSLQPGSSMVAESSSSVVDQDKKSNNLDKDEGDTSNELENAWTAHKTETGAVYYYNSITGKSTYQKPSNFKGESEKATTQSNAVSWEKLAGTDWTIVTTSDGRKYYYDTKNKVSSWHVPAEVAELRKNQESGSTEGSATQLQDASTQGDKVSAPANIAAPAAQIGAHDSMALRSSGAPVSSSALDMVKKKLQEAGTPMTSPHSTSVPATSDANGLKATEAVAKGVINKDKAKDANGEGNMSDSSSDSDDEESGPSKEECIIQFKEMLKERGVAPFSKWDKELPKIVFDPRFKAVPSQSARRALFEHYVRTRAEEERKEKRAAQKAALDAFKQLLEEALEDIDHKTDYHSFKRKWGGDPRFEAIDRKERELLLNEKVKAADEKMRALRMAAATSFKSMLRDNRDITTSSRWSRIKESLRDDPRYKAVKHEQRETLFNEYIAELKSAVDEVERSAKAKRDEQDKLKERERELRKRKEREEKEMERVKLKVRRKEAEYSYRTLLVEMIKDPKASWTESKPKLEKDPQGRATNPDLTQEDAEKLFREHVKDLYERCVNDFRTLLAEVVTVEAAAAKNDDGKTVLNSWSEAKLLLKPDPRYSKMPSKDRESLWRRHTEDMLRRPKSVSDTKESPGTNGRNRMSSAADPLKRSPGRSHRRR
Length1128
PositionUnknown
OrganismMusa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zingiberales> Musaceae> Musa.
Aromaticity0.05
Grand average of hydropathy-0.648
Instability index53.30
Isoelectric point8.84
Molecular weight122045.04
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30584
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     342.51|      52|      53|     141|     192|       1
---------------------------------------------------------------------------
   41-   89 (41.68/17.84)	........AAVIASP................VQGaaTFSSTSdS.V..PSNV........V........VSATLTGSSLLSIGglVKA.HDTS
   90-  132 (56.42/27.01)	QDS....iRAKFSSP.................PG...FVVAA.PsF..SYGV...IPRTNL..........TSGN.......P..QQS.SSSG
  133-  189 (84.81/44.66)	LKLtppvpAAALQPP................VPG..QFLGTR.P.F..PYNV...VSHANV........VPAAGQQIQLNTVP..VQA.HLQG
  190-  241 (74.72/38.39)	GKF.ippsASSLQPP................VPR..QPVRPT.P.F..GPGA...VSL..I........SPS.PMQFPL.SVP..QGD.AIKQ
  359-  424 (48.41/22.03)	.........SSISSPrpiipvtaalpptstsVPV..PF.....P.V..PQNV...QQQTNVhyssqptmAPS.PQASW..SHP..PQAgPMQH
  432-  470 (36.47/14.61)	GFF.....PAPFSLP................VQG.iPPAVPL.P.FiqPPGVslmVS..QV........EPTA....................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.61|      17|      18|     923|     939|       2
---------------------------------------------------------------------------
  887-  903 (25.07/14.51)	KESLRDDPRYKAVKHEQ
  933-  949 (24.55/14.05)	QDKLKERERELRKRKER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     318.49|      63|      66|     752|     814|       3
---------------------------------------------------------------------------
  656-  727 (56.87/33.14)	....ALDMVKKKLQE.......A........G....TpmtsphSTSVPATSD.........ANGLKAteavakgvIN...KDKAKDANGEGNMSDSSSDSDDEESGP
  728-  795 (84.50/53.08)	SKEeCIIQFKEMLKE.........RgvapfsK....W......DKELPKIVF.........DPRFKA........VP...SQSARRALFEHYVRTRAEEERKEKRAA
  796-  859 (81.21/50.71)	QKA.ALDAFKQLLEE.......ALE......D....I......DHKTDYHSF...krkwggDPRFEA........I....DRKERELLLNE..KVKAADEK..MRAL
  963- 1024 (65.16/39.12)	RKE.AEYSYRTLLVE.......MIK......DpkasW......TESKPKLEK.........DPQGRA........TNpdlTQEDAEKLFREHVKDLY..ER......
 1025- 1080 (30.75/14.30)	....CVNDFRTLLAEvvtveaaAAK......N....D......DGKTVLNSWseaklllkpDPRYSK........MP...S.KDRESL...................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     151.88|      45|      45|     495|     539|       4
---------------------------------------------------------------------------
  495-  539 (78.00/56.52)	KKSNNLDKDEGDTSNELENA..........WTAHKTETGAVYYYNSITGKSTYQK
  547-  591 (54.30/36.81)	S........EKATTQS..NAvsweklagtdWTIVTTSDGRKYYYDTKNKVSSWHV
  599-  619 (19.58/ 7.91)	RKNQESGSTEG.SATQLQDA..........ST.......................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.91|      16|      19|    1094|    1109|       5
---------------------------------------------------------------------------
 1094- 1109 (29.67/16.61)	SVSD.TKESPGTNGRNR
 1112- 1128 (25.24/13.01)	SAADpLKRSPGRSHRRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.03|      18|      19|     284|     301|       6
---------------------------------------------------------------------------
  284-  301 (28.97/16.78)	VNSQSVQ..TSQSMPLGTS.T
  305-  323 (24.78/13.08)	INANACA..ASMLIPAAPSfT
  329-  348 (24.29/12.65)	PNARGIPglTGNSSSATAS.T
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30584 with Med35 domain of Kingdom Viridiplantae
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